Variant report

Variant	rs12706140
Chromosome Location	chr7:116707136-116707137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11762032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11764134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11773591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706125	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12706126	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706134	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706136	0.83[ASN][1000 genomes]
rs12706137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12706139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12706141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13221657	0.80[ASN][1000 genomes]
rs13222576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13222912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13239447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13308921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	0.86[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116690600-116711600	Weak transcription	K562	blood
3	chr7:116693800-116709000	Weak transcription	Right Atrium	heart
4	chr7:116700400-116709000	Weak transcription	Aorta	Aorta
5	chr7:116702200-116712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:116702400-116707400	Weak transcription	Brain Germinal Matrix	brain
7	chr7:116702400-116707400	Weak transcription	Psoas Muscle	Psoas
8	chr7:116702400-116708600	Weak transcription	Pancreas	Pancrea
9	chr7:116702400-116708800	Weak transcription	Left Ventricle	heart
10	chr7:116702400-116711600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:116702400-116711600	Weak transcription	HMEC	breast
12	chr7:116702400-116712800	Weak transcription	Gastric	stomach
13	chr7:116702400-116712800	Weak transcription	HSMMtube	muscle
14	chr7:116702600-116708600	Weak transcription	HSMM	muscle
15	chr7:116703000-116707200	Weak transcription	Fetal Heart	heart
16	chr7:116703000-116708600	Weak transcription	NH-A	brain
17	chr7:116703000-116712800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:116703200-116707200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:116704800-116708600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:116704800-116712400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:116705200-116708600	Weak transcription	Brain Angular Gyrus	brain
22	chr7:116705600-116708000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:116705800-116707600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:116705800-116708200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:116705800-116709000	Enhancers	GM12878-XiMat	blood
26	chr7:116705800-116709200	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:116706000-116707400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:116706000-116707600	Weak transcription	Brain Anterior Caudate	brain
29	chr7:116706000-116708600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:116706000-116708800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:116706200-116708400	Weak transcription	NHEK	skin
32	chr7:116706200-116708600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:116706200-116708600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:116706200-116708600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:116706200-116708800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:116706200-116711600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:116706400-116707400	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:116706400-116708600	Weak transcription	Brain Hippocampus Middle	brain
39	chr7:116706400-116708800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:116706400-116709000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr7:116706400-116712600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:116706600-116707200	Enhancers	Primary hematopoietic stem cells	blood
43	chr7:116706600-116707600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:116706800-116708200	Enhancers	Osteobl	bone
45	chr7:116706800-116712800	Weak transcription	Lung	lung
46	chr7:116707000-116707200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:116707000-116707800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:116707000-116708000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:116707000-116708000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:116707000-116709000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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