Variant report

Variant	rs13222912
Chromosome Location	chr7:116703565-116703566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116701593..116703694-chr7:116704475..116707125,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11762032	0.86[ASN][1000 genomes]
rs11764134	0.86[ASN][1000 genomes]
rs11773591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706134	0.86[ASN][1000 genomes]
rs12706135	0.86[ASN][1000 genomes]
rs12706136	0.83[ASN][1000 genomes]
rs12706137	0.86[ASN][1000 genomes]
rs12706138	0.89[ASN][1000 genomes]
rs12706139	0.92[ASN][1000 genomes]
rs12706140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13221657	0.80[ASN][1000 genomes]
rs13222576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13239447	0.84[ASN][1000 genomes]
rs13308921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34042687	0.86[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116690600-116711600	Weak transcription	K562	blood
3	chr7:116692400-116704600	Weak transcription	GM12878-XiMat	blood
4	chr7:116693800-116709000	Weak transcription	Right Atrium	heart
5	chr7:116700400-116709000	Weak transcription	Aorta	Aorta
6	chr7:116701400-116705600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:116701800-116707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:116702200-116704400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:116702200-116712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:116702400-116704800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:116702400-116707400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:116702400-116707400	Weak transcription	Psoas Muscle	Psoas
13	chr7:116702400-116708600	Weak transcription	Pancreas	Pancrea
14	chr7:116702400-116708800	Weak transcription	Left Ventricle	heart
15	chr7:116702400-116711600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:116702400-116711600	Weak transcription	HMEC	breast
17	chr7:116702400-116712800	Weak transcription	Gastric	stomach
18	chr7:116702400-116712800	Weak transcription	HSMMtube	muscle
19	chr7:116702600-116704800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:116702600-116705600	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:116702600-116705800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:116702600-116707000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:116702600-116707000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:116702600-116708600	Weak transcription	HSMM	muscle
25	chr7:116703000-116707000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:116703000-116707200	Weak transcription	Fetal Heart	heart
27	chr7:116703000-116708600	Weak transcription	NH-A	brain
28	chr7:116703000-116712800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:116703200-116706800	Weak transcription	Osteobl	bone
30	chr7:116703200-116707200	Weak transcription	Muscle Satellite Cultured Cells	--

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