Variant report

Variant	rs13222576
Chromosome Location	chr7:116701357-116701358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:116698389-116701885	GM12878	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11762032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11764134	1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.89[ASN][1000 genomes]
rs11773591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706125	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12706126	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706134	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.89[ASN][1000 genomes]
rs12706135	1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.89[ASN][1000 genomes]
rs12706136	0.86[ASN][1000 genomes]
rs12706137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12706138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12706139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12706140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13222912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13239447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13308921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	0.89[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13222576	ST7	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116690600-116711600	Weak transcription	K562	blood
3	chr7:116691800-116702000	Weak transcription	Pancreas	Pancrea
4	chr7:116692200-116702000	Weak transcription	Psoas Muscle	Psoas
5	chr7:116692400-116704600	Weak transcription	GM12878-XiMat	blood
6	chr7:116693800-116709000	Weak transcription	Right Atrium	heart
7	chr7:116700400-116709000	Weak transcription	Aorta	Aorta
8	chr7:116701200-116701400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:116701200-116701600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:116701200-116701800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:116701200-116702000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:116701200-116702000	Enhancers	Osteobl	bone
13	chr7:116701200-116702400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:116701200-116702400	Enhancers	Brain Germinal Matrix	brain
15	chr7:116701200-116702400	Enhancers	HSMMtube	muscle
16	chr7:116701200-116702600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:116701200-116702600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:116701200-116702600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:116701200-116702600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:116701200-116703000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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