Variant report

Variant	rs12706141
Chromosome Location	chr7:116721030-116721031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116500954-116503335..7:116718723-116724481	Hela-S3	cervix:
2	7:116604327-116608063..7:116718723-116724481	Hela-S3	cervix:
3	7:116718723-116724481..7:116728195-116740907	Hela-S3	cervix:
4	7:116718723-116724481..7:116754962-116765597	Hela-S3	cervix:
5	chr7:116719892..116722492-chr7:116724792..116726991,2	K562	blood:
6	7:116718723-116724481..7:117511043-117514740	Hela-S3	cervix:
7	7:115847372-115857098..7:116718723-116724481	Hela-S3	cervix:
8	7:115861595-115870968..7:116718723-116724481	Hela-S3	cervix:
9	chr7:116596123..116598149-chr7:116719116..116721771,2	K562	blood:
10	chr7:116718399..116721102-chr7:116722630..116724611,2	K562	blood:
11	7:116718723-116724481..7:116957165-116964911	H1-hESC	embryonic stem cell:	embryo
12	7:115890993-115892266..7:116718723-116724481	H1-hESC	embryonic stem cell:	embryo

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WNT2-1	chr7:116720919-116721126	ENSG00000226367.1
2	lnc-WNT2-1	chr7:116720919-116721126	ENSG00000226367.1
3	lnc-WNT2-1	chr7:116720919-116721126	NR_109980

No data

Variant related genes	Relation type
ENSG00000105989	Chromatin interaction
ENSG00000214188	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000228368	Chromatin interaction
ENSG00000077063	Chromatin interaction
ENSG00000226367	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11762032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11764134	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.86[ASN][1000 genomes]
rs11773591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706125	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12706126	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706134	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];0.86[ASN][1000 genomes]
rs12706135	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.86[ASN][1000 genomes]
rs12706136	0.83[ASN][1000 genomes]
rs12706137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12706139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12706140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13221657	0.80[ASN][1000 genomes]
rs13222576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13222912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13239447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13308921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	0.86[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116712000-116724200	Weak transcription	K562	blood
2	chr7:116713200-116723800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:116713200-116723800	Weak transcription	Brain Angular Gyrus	brain
6	chr7:116713200-116730800	Weak transcription	Aorta	Aorta
7	chr7:116714600-116723400	Weak transcription	Gastric	stomach
8	chr7:116715800-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:116716800-116723800	Weak transcription	Esophagus	oesophagus
10	chr7:116716800-116725400	Weak transcription	Brain Anterior Caudate	brain
11	chr7:116716800-116727800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:116717000-116724000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:116717000-116727000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:116717200-116725000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:116717200-116727800	Weak transcription	Right Atrium	heart
16	chr7:116717200-116744400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr7:116717400-116722800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr7:116717400-116723400	Weak transcription	Left Ventricle	heart
19	chr7:116717400-116723800	Weak transcription	Right Ventricle	heart
20	chr7:116717400-116724000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:116717400-116736200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:116717600-116730400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:116717800-116721800	Weak transcription	Stomach Mucosa	stomach
24	chr7:116718200-116724400	Weak transcription	Fetal Heart	heart
25	chr7:116718200-116725400	Weak transcription	Fetal Brain Male	brain
26	chr7:116718400-116721200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:116719000-116723800	Weak transcription	Brain Germinal Matrix	brain
28	chr7:116719600-116722000	Weak transcription	Ovary	ovary
29	chr7:116720200-116721800	Enhancers	GM12878-XiMat	blood
30	chr7:116721000-116721400	Enhancers	HUVEC	blood vessel

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