Variant report

Variant	rs12706139
Chromosome Location	chr7:116675641-116675642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116673925..116679714-chr7:116680423..116685011,12	K562	blood:
2	chr7:116592853..116594381-chr7:116674876..116677261,2	K562	blood:
3	chr7:116660331..116662113-chr7:116674978..116676956,2	MCF-7	breast:
4	chr7:116674998..116677128-chr7:116725796..116728489,2	MCF-7	breast:
5	chr7:116666668..116671169-chr7:116672583..116677847,7	K562	blood:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000214188	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11762032	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11764134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11773591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12706125	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12706126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12706127	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12706134	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706135	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706136	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12706137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706138	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12706141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13222576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13222912	0.92[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13235739	0.81[ASN][1000 genomes]
rs13239447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13243111	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13308921	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap]
rs66758829	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs71544773	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116665800-116680600	Weak transcription	Osteobl	bone
2	chr7:116666200-116680400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116667000-116681000	Weak transcription	NH-A	brain
4	chr7:116667200-116676000	Weak transcription	K562	blood
5	chr7:116667200-116680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:116671600-116676000	Weak transcription	Fetal Heart	heart
7	chr7:116671600-116676200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:116671600-116676200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:116671600-116676200	Weak transcription	Fetal Brain Male	brain
10	chr7:116671600-116677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:116671600-116677000	Weak transcription	GM12878-XiMat	blood
12	chr7:116671600-116680200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:116672200-116676200	Weak transcription	Psoas Muscle	Psoas
14	chr7:116674000-116676600	Enhancers	HUVEC	blood vessel
15	chr7:116674000-116677400	Weak transcription	Aorta	Aorta
16	chr7:116674000-116677400	Enhancers	Brain Germinal Matrix	brain
17	chr7:116674200-116676200	Weak transcription	Right Atrium	heart
18	chr7:116674200-116677000	Weak transcription	Pancreas	Pancrea
19	chr7:116674200-116681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:116674200-116685400	Weak transcription	HMEC	breast
21	chr7:116674400-116677000	Enhancers	Colon Smooth Muscle	Colon
22	chr7:116674600-116676800	Enhancers	Fetal Lung	lung
23	chr7:116674800-116676400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:116674800-116676400	Enhancers	Rectal Smooth Muscle	rectum
25	chr7:116674800-116676600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:116674800-116677200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:116674800-116677200	Enhancers	Brain Anterior Caudate	brain
28	chr7:116674800-116686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:116675000-116676200	Weak transcription	Fetal Brain Female	brain
30	chr7:116675000-116680000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:116675200-116676200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:116675200-116676400	Enhancers	Fetal Stomach	stomach
33	chr7:116675200-116676800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:116675200-116677600	Enhancers	Brain Hippocampus Middle	brain
35	chr7:116675200-116683200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:116675400-116676600	Weak transcription	HSMMtube	muscle
37	chr7:116675400-116680600	Weak transcription	NHDF-Ad	bronchial
38	chr7:116675400-116680800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:116675400-116685400	Weak transcription	Left Ventricle	heart
40	chr7:116675400-116691800	Weak transcription	Ovary	ovary
41	chr7:116675600-116676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:116675600-116676800	Enhancers	Pancreatic Islets	Pancreatic Islet

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