Variant report

Variant	rs13308921
Chromosome Location	chr7:116716800-116716801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr7:116716335-116716821	HepG2	liver:	n/a	n/a
2	FOXA1	chr7:116716246-116716822	HepG2	liver:	n/a	n/a
3	FOXA1	chr7:116716376-116716858	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ST7-AS2	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11762032	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11764134	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11773591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12706125	1.00[CHB][hapmap]
rs12706126	1.00[CHB][hapmap]
rs12706134	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12706135	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12706136	0.83[ASN][1000 genomes]
rs12706137	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12706138	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12706139	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12706140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13221657	0.80[ASN][1000 genomes]
rs13222576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13222912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13239447	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	0.86[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116711600-116718200	Enhancers	Fetal Heart	heart
2	chr7:116712000-116724200	Weak transcription	K562	blood
3	chr7:116713200-116717000	Weak transcription	Fetal Brain Male	brain
4	chr7:116713200-116723800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:116713200-116723800	Weak transcription	Brain Angular Gyrus	brain
8	chr7:116713200-116730800	Weak transcription	Aorta	Aorta
9	chr7:116713400-116717600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:116713400-116721000	Weak transcription	HUVEC	blood vessel
11	chr7:116714000-116717200	Weak transcription	Stomach Mucosa	stomach
12	chr7:116714600-116723400	Weak transcription	Gastric	stomach
13	chr7:116715400-116716800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:116715400-116717400	Enhancers	Right Ventricle	heart
15	chr7:116715400-116717400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:116715600-116717200	ZNF genes & repeats	GM12878-XiMat	blood
17	chr7:116715600-116719200	Enhancers	Liver	Liver
18	chr7:116715800-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:116716000-116716800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:116716000-116717200	Enhancers	Right Atrium	heart
21	chr7:116716200-116717400	Enhancers	Pancreas	Pancrea
22	chr7:116716400-116716800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:116716400-116716800	Enhancers	Brain Anterior Caudate	brain
24	chr7:116716400-116717000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:116716400-116717000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:116716400-116717000	Enhancers	Psoas Muscle	Psoas
27	chr7:116716400-116717400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:116716600-116716800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr7:116716600-116716800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:116716600-116716800	Enhancers	Esophagus	oesophagus
31	chr7:116716600-116716800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr7:116716600-116717000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr7:116716600-116717000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:116716600-116717000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:116716600-116717000	ZNF genes & repeats	Fetal Stomach	stomach
36	chr7:116716600-116717000	Enhancers	Lung	lung
37	chr7:116716600-116717200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr7:116716600-116717200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:116716600-116717200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
40	chr7:116716600-116717200	Enhancers	Hela-S3	cervix
41	chr7:116716600-116717200	Flanking Active TSS	HepG2	liver
42	chr7:116716600-116717400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:116716600-116717400	Enhancers	Brain Substantia Nigra	brain
44	chr7:116716600-116717400	Enhancers	Left Ventricle	heart
45	chr7:116716800-116717000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr7:116716800-116717400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr7:116716800-116723800	Weak transcription	Esophagus	oesophagus
48	chr7:116716800-116725400	Weak transcription	Brain Anterior Caudate	brain
49	chr7:116716800-116727800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links