Variant report

Variant	rs12706137
Chromosome Location	chr7:116664727-116664728
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116659844..116662054-chr7:116663899..116666777,2	MCF-7	breast:
2	chr7:116663523..116665031-chr7:116668004..116669700,2	K562	blood:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11762032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765198	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs11773591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12706124	0.87[EUR][1000 genomes]
rs12706125	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12706126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12706127	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12706134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706136	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12706139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706143	1.00[CHB][hapmap]
rs12706144	1.00[CHB][hapmap]
rs13222576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13222912	0.86[ASN][1000 genomes]
rs13224314	1.00[CHB][hapmap]
rs13235739	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13239447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13243111	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13308921	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2188693	1.00[CHB][hapmap]
rs34042687	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808218	1.00[CHB][hapmap]
rs3808222	1.00[CHB][hapmap]
rs66758829	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71544773	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116660800-116666600	Weak transcription	Right Ventricle	heart
2	chr7:116661000-116664800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:116661000-116664800	Weak transcription	NHDF-Ad	bronchial
4	chr7:116661000-116664800	Weak transcription	Osteobl	bone
5	chr7:116661000-116665600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:116661000-116666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:116661000-116666600	Weak transcription	Ovary	ovary
8	chr7:116661000-116666600	Weak transcription	Pancreas	Pancrea
9	chr7:116661000-116666600	Weak transcription	Right Atrium	heart
10	chr7:116661000-116669400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:116661200-116664800	Weak transcription	HUVEC	blood vessel
12	chr7:116661400-116666800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:116661600-116670800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:116661800-116668600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:116662000-116665400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:116662000-116675200	Weak transcription	Fetal Stomach	stomach
17	chr7:116662200-116665400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:116663600-116664800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:116663600-116664800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:116663600-116664800	Weak transcription	Brain Substantia Nigra	brain
21	chr7:116663600-116664800	Weak transcription	NH-A	brain
22	chr7:116663600-116665000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:116663600-116665600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:116663600-116666600	Weak transcription	Aorta	Aorta
25	chr7:116663600-116666800	Weak transcription	Brain Anterior Caudate	brain
26	chr7:116663600-116670600	Weak transcription	Fetal Lung	lung
27	chr7:116663800-116664800	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:116663800-116664800	Weak transcription	Fetal Heart	heart
29	chr7:116663800-116666000	Weak transcription	K562	blood
30	chr7:116663800-116666600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:116663800-116668400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:116664000-116670800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:116664400-116664800	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr7:116664400-116665000	Flanking Active TSS	Fetal Brain Female	brain
35	chr7:116664400-116666200	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr7:116664600-116664800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr7:116664600-116664800	Active TSS	Brain Angular Gyrus	brain
38	chr7:116664600-116664800	Enhancers	Fetal Brain Male	brain
39	chr7:116664600-116664800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr7:116664600-116665000	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links