Variant report

Variant	rs11766354
Chromosome Location	chr7:27453221-27453222
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27238414-27242313..7:27451120-27453586	Hela-S3	cervix:
2	7:27282073-27287306..7:27451120-27453586	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000106038	Chromatin interaction
ENSG00000253405	Chromatin interaction
ENSG00000106031	Chromatin interaction
ENSG00000243766	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11564044	1.00[ASN][1000 genomes]
rs11761572	1.00[ASN][1000 genomes]
rs11762186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764246	1.00[ASN][1000 genomes]
rs11767145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767850	1.00[ASN][1000 genomes]
rs11768223	1.00[ASN][1000 genomes]
rs11971150	1.00[ASN][1000 genomes]
rs11973735	1.00[ASN][1000 genomes]
rs11975202	1.00[ASN][1000 genomes]
rs11977099	1.00[ASN][1000 genomes]
rs11983008	1.00[ASN][1000 genomes]
rs11983027	1.00[ASN][1000 genomes]
rs17428012	1.00[ASN][1000 genomes]
rs17428025	1.00[ASN][1000 genomes]
rs17428046	1.00[ASN][1000 genomes]
rs17428116	1.00[ASN][1000 genomes]
rs17428157	1.00[ASN][1000 genomes]
rs17428240	1.00[ASN][1000 genomes]
rs17428254	1.00[ASN][1000 genomes]
rs17428988	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429051	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429557	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429691	1.00[ASN][1000 genomes]
rs17429719	1.00[ASN][1000 genomes]
rs17429726	1.00[ASN][1000 genomes]
rs17437657	1.00[ASN][1000 genomes]
rs17437775	1.00[ASN][1000 genomes]
rs17437824	1.00[ASN][1000 genomes]
rs17438403	1.00[ASN][1000 genomes]
rs17438410	1.00[ASN][1000 genomes]
rs17439165	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17439312	1.00[ASN][1000 genomes]
rs17439333	1.00[ASN][1000 genomes]
rs17472756	1.00[ASN][1000 genomes]
rs17472763	1.00[ASN][1000 genomes]
rs17472892	1.00[ASN][1000 genomes]
rs17472962	1.00[ASN][1000 genomes]
rs17502037	1.00[ASN][1000 genomes]
rs2189239	1.00[ASN][1000 genomes]
rs35786897	1.00[ASN][1000 genomes]
rs59133852	1.00[ASN][1000 genomes]
rs60356285	1.00[ASN][1000 genomes]
rs6461996	1.00[ASN][1000 genomes]
rs6948488	1.00[ASN][1000 genomes]
rs6951363	1.00[ASN][1000 genomes]
rs6952719	1.00[ASN][1000 genomes]
rs6965319	1.00[ASN][1000 genomes]
rs6977425	1.00[ASN][1000 genomes]
rs7783517	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27444800-27458000	Weak transcription	Pancreas	Pancrea
2	chr7:27444800-27458000	Weak transcription	Stomach Mucosa	stomach
3	chr7:27453200-27454200	Enhancers	Fetal Lung	lung

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