Variant report

Variant	rs17438410
Chromosome Location	chr7:27355950-27355951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27238414-27242313..7:27354053-27367655	Hela-S3	cervix:
2	chr7:27354696..27356208-chr7:27362416..27365005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106031	Chromatin interaction
ENSG00000243766	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11564044	1.00[ASN][1000 genomes]
rs11761572	1.00[ASN][1000 genomes]
rs11762186	1.00[ASN][1000 genomes]
rs11764246	1.00[ASN][1000 genomes]
rs11766354	1.00[ASN][1000 genomes]
rs11767145	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11767850	1.00[ASN][1000 genomes]
rs11768223	1.00[ASN][1000 genomes]
rs11971150	1.00[ASN][1000 genomes]
rs11973735	1.00[ASN][1000 genomes]
rs11975202	1.00[ASN][1000 genomes]
rs11977099	1.00[ASN][1000 genomes]
rs11983008	1.00[ASN][1000 genomes]
rs11983027	1.00[ASN][1000 genomes]
rs17427421	1.00[ASN][1000 genomes]
rs17428012	1.00[ASN][1000 genomes]
rs17428025	1.00[ASN][1000 genomes]
rs17428046	1.00[ASN][1000 genomes]
rs17428116	1.00[ASN][1000 genomes]
rs17428157	1.00[ASN][1000 genomes]
rs17428240	1.00[ASN][1000 genomes]
rs17428254	1.00[ASN][1000 genomes]
rs17428988	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429051	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429557	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17429691	1.00[ASN][1000 genomes]
rs17429719	1.00[ASN][1000 genomes]
rs17429726	1.00[ASN][1000 genomes]
rs17437657	1.00[ASN][1000 genomes]
rs17437775	1.00[ASN][1000 genomes]
rs17437824	1.00[ASN][1000 genomes]
rs17438403	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17438736	1.00[AFR][1000 genomes]
rs17439165	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17439312	1.00[ASN][1000 genomes]
rs17439333	1.00[ASN][1000 genomes]
rs17472756	1.00[ASN][1000 genomes]
rs17472763	1.00[ASN][1000 genomes]
rs17472892	1.00[ASN][1000 genomes]
rs17472962	1.00[ASN][1000 genomes]
rs17501111	1.00[ASN][1000 genomes]
rs17502037	1.00[ASN][1000 genomes]
rs2189239	1.00[ASN][1000 genomes]
rs28357135	1.00[ASN][1000 genomes]
rs35786897	1.00[ASN][1000 genomes]
rs4722669	1.00[ASN][1000 genomes]
rs59133852	1.00[ASN][1000 genomes]
rs60356285	1.00[ASN][1000 genomes]
rs6461996	1.00[ASN][1000 genomes]
rs6948488	1.00[ASN][1000 genomes]
rs6951363	1.00[ASN][1000 genomes]
rs6952719	1.00[ASN][1000 genomes]
rs6965319	1.00[ASN][1000 genomes]
rs6977425	1.00[ASN][1000 genomes]
rs7783517	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1026851	chr7:27344799-27370551	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27352400-27357000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:27353400-27356400	Enhancers	Fetal Lung	lung
3	chr7:27354000-27357400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:27354200-27357000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:27354600-27356000	Weak transcription	Placenta	Placenta
6	chr7:27355800-27356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:27355800-27356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:27355800-27356400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:27355800-27356400	Enhancers	Adipose Nuclei	Adipose
10	chr7:27355800-27356400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr7:27355800-27356600	Enhancers	Osteobl	bone

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