Variant report
| Variant | rs11766457 |
|---|---|
| Chromosome Location | chr7:27712104-27712105 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229893 | Chromatin interaction |
| ENSG00000106052 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10447552 | 0.80[ASN][1000 genomes] |
| rs10951175 | 0.80[ASN][1000 genomes] |
| rs10951176 | 0.80[ASN][1000 genomes] |
| rs1115346 | 0.80[ASN][1000 genomes] |
| rs11762342 | 0.80[ASN][1000 genomes] |
| rs11763449 | 0.80[ASN][1000 genomes] |
| rs11973492 | 0.80[ASN][1000 genomes] |
| rs12155430 | 0.80[ASN][1000 genomes] |
| rs12531952 | 0.93[ASN][1000 genomes] |
| rs12535844 | 0.80[ASN][1000 genomes] |
| rs12665991 | 0.80[ASN][1000 genomes] |
| rs12667610 | 0.80[ASN][1000 genomes] |
| rs12672811 | 0.80[ASN][1000 genomes] |
| rs13242248 | 0.80[ASN][1000 genomes] |
| rs13244903 | 0.80[ASN][1000 genomes] |
| rs2391452 | 0.80[ASN][1000 genomes] |
| rs2391453 | 0.80[ASN][1000 genomes] |
| rs42085 | 0.89[ASN][1000 genomes] |
| rs4722728 | 0.80[ASN][1000 genomes] |
| rs56139857 | 0.80[ASN][1000 genomes] |
| rs6462038 | 0.80[ASN][1000 genomes] |
| rs6945993 | 0.80[ASN][1000 genomes] |
| rs6948460 | 0.80[ASN][1000 genomes] |
| rs6959495 | 0.80[ASN][1000 genomes] |
| rs6961429 | 0.93[ASN][1000 genomes] |
| rs6963421 | 0.80[ASN][1000 genomes] |
| rs6966587 | 0.80[ASN][1000 genomes] |
| rs6970104 | 0.80[ASN][1000 genomes] |
| rs6974387 | 0.80[ASN][1000 genomes] |
| rs6974932 | 0.80[ASN][1000 genomes] |
| rs7805086 | 0.80[ASN][1000 genomes] |
| rs7806812 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949025 | chr7:27578167-28075172 | Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11766457 | TAX1BP1 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27711400-27716200 | Weak transcription | NHDF-Ad | bronchial |
| 2 | chr7:27711400-27717000 | Weak transcription | K562 | blood |
