Variant report

Variant	rs12535844
Chromosome Location	chr7:27689824-27689825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27674365..27676179-chr7:27687699..27690362,2	MCF-7	breast:
2	chr7:27681178..27683766-chr7:27689804..27691438,2	K562	blood:
3	chr7:27688516..27691230-chr7:27701301..27703527,2	K562	blood:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1005128	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10081338	0.90[AMR][1000 genomes]
rs10081339	0.90[AMR][1000 genomes]
rs1009252	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1014373	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1015750	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1030003	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10447552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486548	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1052724	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1052741	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10807841	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10951169	0.80[EUR][1000 genomes]
rs10951171	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10951172	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10951173	0.87[AMR][1000 genomes]
rs10951175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951176	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1111647	0.80[EUR][1000 genomes]
rs1115346	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115347	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11526176	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11762342	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763449	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764753	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11766457	0.80[ASN][1000 genomes]
rs11767188	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11973492	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111584	0.84[EUR][1000 genomes]
rs12155430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12164139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12530626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12531518	0.85[AMR][1000 genomes]
rs12531952	0.87[ASN][1000 genomes]
rs12537499	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12540063	0.87[AMR][1000 genomes]
rs12540276	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12665991	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667235	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12667610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668430	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12670415	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12670771	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672811	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700813	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12700815	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12700817	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12700819	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12700822	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12700823	0.87[AMR][1000 genomes]
rs12700824	0.87[AMR][1000 genomes]
rs12700825	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12700826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12700828	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12700829	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12700830	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13226102	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13227873	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13237776	1.00[JPT][hapmap]
rs13242248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13308974	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1357760	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1404276	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1404278	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1524526	0.81[ASN][1000 genomes]
rs1524530	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1524531	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1524532	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1524533	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1554641	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1608664	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17155546	1.00[JPT][hapmap]
rs1851913	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1880370	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1980329	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2041714	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2080245	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[EUR][1000 genomes]
rs2080246	0.82[EUR][1000 genomes]
rs2091171	0.81[EUR][1000 genomes]
rs2098315	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2098316	0.82[EUR][1000 genomes]
rs2110526	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2110528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2160125	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2391443	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2391445	0.82[CHB][hapmap]
rs2391446	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2391447	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2391448	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2391449	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2391451	0.87[AMR][1000 genomes]
rs2391452	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391454	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28416309	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28429439	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3847001	0.82[EUR][1000 genomes]
rs3925338	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4140899	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs42085	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42087	0.90[AMR][1000 genomes]
rs42092	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs42099	1.00[JPT][hapmap]
rs42111	0.92[EUR][1000 genomes]
rs4348389	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4719898	0.83[EUR][1000 genomes]
rs4719900	0.84[EUR][1000 genomes]
rs4719902	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4722719	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4722724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4722726	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4722728	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56123216	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56139857	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58747588	0.93[ASN][1000 genomes]
rs6415251	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462026	0.83[EUR][1000 genomes]
rs6462029	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6462031	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6462034	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs6462036	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6462037	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6462038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462039	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs6943883	0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6944610	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6945993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946075	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6946305	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6947731	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6948460	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948814	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6949496	0.82[EUR][1000 genomes]
rs6954905	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs6955074	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6957378	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6957674	0.81[EUR][1000 genomes]
rs6958747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6959126	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6959495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960834	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6961429	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6963421	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963585	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6964190	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6966091	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs6966587	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974052	0.80[EUR][1000 genomes]
rs6974387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980382	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs723699	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs723700	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7455882	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs759269	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7778320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7779990	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7780431	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7782422	0.83[AMR][1000 genomes]
rs7783447	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7789788	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7790498	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7805086	1.00[ASN][1000 genomes]
rs7806415	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7806605	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7806812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808275	0.87[AMR][1000 genomes]
rs7809748	1.00[CEU][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7811436	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs961723	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs961724	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs961725	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs9639552	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9639553	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9639560	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs974883	0.82[CEU][hapmap]
rs978447	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs986706	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12535844	HIBADH	Cis_1M	lymphoblastoid	RTeQTL
rs12535844	HIBADH	cis	multi-tissue	Pritchard

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27654400-27696400	Weak transcription	Gastric	stomach
2	chr7:27660600-27701000	Weak transcription	Right Ventricle	heart
3	chr7:27661200-27694800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:27661400-27700800	Weak transcription	Thymus	Thymus
5	chr7:27661800-27692200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:27661800-27694400	Weak transcription	Lung	lung
7	chr7:27671400-27701600	Weak transcription	Spleen	Spleen
8	chr7:27674000-27700800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:27674800-27695200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:27675000-27700800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:27675400-27701400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:27676000-27701600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:27676200-27693200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:27676200-27701600	Weak transcription	Psoas Muscle	Psoas
15	chr7:27676600-27700600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:27676800-27692000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:27677400-27701400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:27680400-27701000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:27680800-27701200	Weak transcription	Small Intestine	intestine
20	chr7:27681000-27701200	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:27681600-27691000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:27681600-27691200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:27681600-27691600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:27681600-27701400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:27681600-27701400	Weak transcription	Fetal Kidney	kidney
26	chr7:27681800-27691400	Weak transcription	Osteobl	bone
27	chr7:27681800-27696600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:27681800-27696600	Weak transcription	Brain Substantia Nigra	brain
29	chr7:27681800-27696800	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:27681800-27700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:27681800-27700600	Weak transcription	Colon Smooth Muscle	Colon
32	chr7:27681800-27701000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:27681800-27701000	Weak transcription	Pancreas	Pancrea
34	chr7:27681800-27701400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:27681800-27701400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:27681800-27701400	Weak transcription	Fetal Heart	heart
37	chr7:27682000-27691200	Weak transcription	HSMMtube	muscle
38	chr7:27682000-27700400	Weak transcription	HepG2	liver
39	chr7:27682200-27691200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:27682200-27701400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:27682600-27692200	Weak transcription	Aorta	Aorta
42	chr7:27683600-27700600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:27683600-27700600	Weak transcription	NHEK	skin
44	chr7:27683600-27701000	Weak transcription	HMEC	breast
45	chr7:27685200-27690200	Weak transcription	Fetal Brain Female	brain
46	chr7:27685400-27692800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:27685400-27700600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:27685400-27701400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:27685400-27701400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:27687000-27692200	Weak transcription	Fetal Intestine Small	intestine

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