Variant report

Variant	rs42085
Chromosome Location	chr7:27697939-27697940
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27696179..27700055-chr7:27700776..27704160,5	MCF-7	breast:
2	chr7:27695861..27699801-chr7:27700986..27703723,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1005128	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10081338	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10081339	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1009252	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1014373	0.95[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1015750	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1030003	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10447552	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10486548	1.00[ASW][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1052724	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1052741	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs10807841	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10951171	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10951172	1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10951173	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10951175	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10951176	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1115346	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1115347	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11526176	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs11762342	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11763449	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11764753	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11766457	0.89[ASN][1000 genomes]
rs11767188	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11973492	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12111584	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12112192	0.80[AMR][1000 genomes]
rs12155430	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12164139	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12530626	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12531518	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12531952	0.96[ASN][1000 genomes]
rs12535844	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12537499	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12540063	0.88[AMR][1000 genomes]
rs12540276	0.93[GIH][hapmap];1.00[JPT][hapmap]
rs12665991	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12667235	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12667610	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12668430	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12670415	1.00[CEU][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12670771	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12672811	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12673949	0.80[MEX][hapmap]
rs12700813	1.00[JPT][hapmap]
rs12700815	1.00[JPT][hapmap]
rs12700817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12700819	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12700822	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12700823	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12700824	0.88[AMR][1000 genomes]
rs12700825	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12700826	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12700828	0.91[AMR][1000 genomes]
rs12700829	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12700830	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12700832	0.81[ASN][1000 genomes]
rs13226102	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13227873	1.00[JPT][hapmap]
rs13237776	1.00[JPT][hapmap]
rs13242248	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13244903	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13246464	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13308974	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1357760	1.00[JPT][hapmap]
rs1404276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1404278	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1404282	1.00[ASW][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap]
rs1524530	1.00[JPT][hapmap]
rs1524531	1.00[JPT][hapmap]
rs1524532	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1524533	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1554641	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1608663	1.00[ASW][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap]
rs1608664	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17155546	1.00[JPT][hapmap]
rs1851913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1880370	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1980329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2041714	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2080245	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2080246	0.81[AMR][1000 genomes]
rs2098315	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2098316	0.81[AMR][1000 genomes]
rs2110526	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2110528	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2160125	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2391443	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2391445	0.81[AMR][1000 genomes]
rs2391446	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs2391447	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2391448	0.86[AMR][1000 genomes]
rs2391449	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391451	0.88[AMR][1000 genomes]
rs2391452	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391453	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391454	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28416309	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28429439	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3925338	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4140899	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs42087	1.00[ASW][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs42088	0.92[LWK][hapmap]
rs42092	0.89[AMR][1000 genomes]
rs42099	1.00[JPT][hapmap]
rs42111	0.90[EUR][1000 genomes]
rs4348389	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4719898	0.81[EUR][1000 genomes]
rs4719900	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4719902	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4722719	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4722724	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4722726	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4722728	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56123216	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56139857	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58747588	0.83[ASN][1000 genomes]
rs6415251	0.94[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6462026	0.81[EUR][1000 genomes]
rs6462029	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6462031	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6462034	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs6462036	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6462037	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6462038	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6462039	1.00[ASW][hapmap];0.92[LWK][hapmap];0.94[TSI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6943883	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6944610	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6945993	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6946075	1.00[JPT][hapmap]
rs6946305	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6947731	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6948460	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6948814	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6954905	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6955074	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6957378	1.00[ASW][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6958747	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs6959126	0.85[AMR][1000 genomes]
rs6959495	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6960834	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6961429	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6963421	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6963585	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6964190	1.00[JPT][hapmap]
rs6966091	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6966587	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6970104	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974387	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974932	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6980382	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs723699	1.00[JPT][hapmap]
rs723700	1.00[JPT][hapmap]
rs7455882	1.00[JPT][hapmap]
rs759269	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs759270	0.81[AMR][1000 genomes]
rs759271	0.81[AMR][1000 genomes]
rs7778320	0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7779990	0.91[AMR][1000 genomes]
rs7780431	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7782422	0.85[AMR][1000 genomes]
rs7783447	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7789788	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7790498	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7794292	1.00[JPT][hapmap]
rs7805086	0.90[ASN][1000 genomes]
rs7806415	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7806605	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7806812	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808275	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7809748	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7811436	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs961723	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs961724	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs961725	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9639552	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9639553	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9639560	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs974883	0.81[CEU][hapmap]
rs978447	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs986706	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs42085	HIBADH	Cis_1M	lymphoblastoid	RTeQTL
rs42085	HIBADH	cis	lymphoblastoid	seeQTL
rs42085	HIBADH	cis	multi-tissue	Pritchard

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27660600-27701000	Weak transcription	Right Ventricle	heart
2	chr7:27661400-27700800	Weak transcription	Thymus	Thymus
3	chr7:27671400-27701600	Weak transcription	Spleen	Spleen
4	chr7:27674000-27700800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:27675000-27700800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:27675400-27701400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:27676000-27701600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:27676200-27701600	Weak transcription	Psoas Muscle	Psoas
9	chr7:27676600-27700600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:27677400-27701400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:27680400-27701000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:27680800-27701200	Weak transcription	Small Intestine	intestine
13	chr7:27681000-27701200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:27681600-27701400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:27681600-27701400	Weak transcription	Fetal Kidney	kidney
16	chr7:27681800-27700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:27681800-27700600	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:27681800-27701000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:27681800-27701000	Weak transcription	Pancreas	Pancrea
20	chr7:27681800-27701400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:27681800-27701400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:27681800-27701400	Weak transcription	Fetal Heart	heart
23	chr7:27682000-27700400	Weak transcription	HepG2	liver
24	chr7:27682200-27701400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:27683600-27700600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:27683600-27700600	Weak transcription	NHEK	skin
27	chr7:27683600-27701000	Weak transcription	HMEC	breast
28	chr7:27685400-27700600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:27685400-27701400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:27685400-27701400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:27687000-27700600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:27687000-27701400	Weak transcription	HUVEC	blood vessel
33	chr7:27687000-27701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:27687200-27701200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:27687400-27701400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:27687800-27700800	Weak transcription	Brain Angular Gyrus	brain
37	chr7:27688000-27700800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:27688000-27700800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:27688000-27701200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:27688000-27701600	Weak transcription	Left Ventricle	heart
41	chr7:27688200-27700600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:27688600-27700400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr7:27688600-27700600	Weak transcription	Brain Anterior Caudate	brain
44	chr7:27688800-27699000	Weak transcription	Fetal Lung	lung
45	chr7:27688800-27700800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:27688800-27700800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr7:27688800-27701200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:27688800-27701400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:27688800-27701400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:27689000-27698400	Weak transcription	Fetal Intestine Large	intestine

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