Variant report

Variant	rs13237776
Chromosome Location	chr7:27709673-27709674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27701957..27704245-chr7:27706162..27711056,8	K562	blood:
2	chr7:27702921..27706495-chr7:27708435..27711221,3	K562	blood:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1009252	1.00[JPT][hapmap]
rs1014373	1.00[JPT][hapmap]
rs1015750	1.00[JPT][hapmap]
rs1030003	1.00[JPT][hapmap]
rs10447552	1.00[JPT][hapmap]
rs1052724	1.00[JPT][hapmap]
rs1052741	1.00[JPT][hapmap]
rs10951172	1.00[JPT][hapmap]
rs10951175	1.00[JPT][hapmap]
rs10951176	1.00[JPT][hapmap]
rs10951177	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11526176	1.00[JPT][hapmap]
rs12113070	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155430	1.00[JPT][hapmap]
rs12164139	1.00[JPT][hapmap]
rs12530626	1.00[JPT][hapmap]
rs12534474	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535844	1.00[JPT][hapmap]
rs12537499	1.00[JPT][hapmap]
rs12540276	1.00[JPT][hapmap]
rs12665991	1.00[JPT][hapmap]
rs12667235	1.00[JPT][hapmap]
rs12667610	1.00[JPT][hapmap]
rs12668430	1.00[JPT][hapmap]
rs12700813	1.00[JPT][hapmap]
rs12700815	1.00[JPT][hapmap]
rs12700817	1.00[JPT][hapmap]
rs12700826	1.00[JPT][hapmap]
rs13220997	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13222355	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227521	0.93[TSI][hapmap]
rs13227574	0.96[TSI][hapmap]
rs13227873	1.00[JPT][hapmap]
rs13231645	0.96[TSI][hapmap]
rs13232561	0.90[TSI][hapmap]
rs13234293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13242248	1.00[JPT][hapmap]
rs13244903	1.00[JPT][hapmap]
rs13246464	1.00[JPT][hapmap]
rs1357760	1.00[JPT][hapmap]
rs1404276	1.00[JPT][hapmap]
rs1404278	1.00[JPT][hapmap]
rs1524530	1.00[JPT][hapmap]
rs1524531	1.00[JPT][hapmap]
rs1524533	1.00[JPT][hapmap]
rs1608664	1.00[JPT][hapmap]
rs17155546	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1851913	1.00[JPT][hapmap]
rs1880370	1.00[JPT][hapmap]
rs1980329	1.00[JPT][hapmap]
rs2041714	1.00[JPT][hapmap]
rs2080245	1.00[JPT][hapmap]
rs2098315	1.00[JPT][hapmap]
rs2110526	1.00[JPT][hapmap]
rs2110528	1.00[JPT][hapmap]
rs2391452	1.00[JPT][hapmap]
rs2391453	1.00[JPT][hapmap]
rs34347197	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35070852	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35847205	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925338	1.00[JPT][hapmap]
rs4140899	1.00[JPT][hapmap]
rs42085	1.00[JPT][hapmap]
rs42099	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4348389	1.00[JPT][hapmap]
rs4719901	0.96[TSI][hapmap]
rs4719902	1.00[JPT][hapmap]
rs4722719	1.00[JPT][hapmap]
rs4722724	1.00[JPT][hapmap]
rs4722728	1.00[JPT][hapmap]
rs6415251	1.00[JPT][hapmap]
rs6462029	1.00[JPT][hapmap]
rs6462031	1.00[JPT][hapmap]
rs6462034	1.00[JPT][hapmap]
rs6462037	1.00[JPT][hapmap]
rs6462038	1.00[JPT][hapmap]
rs6945993	1.00[JPT][hapmap]
rs6946075	1.00[JPT][hapmap]
rs6947731	1.00[JPT][hapmap]
rs6948814	1.00[JPT][hapmap]
rs6955074	1.00[JPT][hapmap]
rs6958747	1.00[JPT][hapmap]
rs6959495	1.00[JPT][hapmap]
rs6960834	1.00[JPT][hapmap]
rs6961429	1.00[JPT][hapmap]
rs6963421	1.00[JPT][hapmap]
rs6964190	1.00[JPT][hapmap]
rs6970104	1.00[JPT][hapmap]
rs6971512	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974387	1.00[JPT][hapmap]
rs6974932	1.00[JPT][hapmap]
rs6980382	1.00[JPT][hapmap]
rs71539536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71539538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71539539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71539540	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723699	1.00[JPT][hapmap]
rs723700	1.00[JPT][hapmap]
rs73287115	0.80[ASN][1000 genomes]
rs7455882	1.00[JPT][hapmap]
rs7778320	1.00[JPT][hapmap]
rs7783447	1.00[JPT][hapmap]
rs7789788	1.00[JPT][hapmap]
rs7794292	1.00[JPT][hapmap]
rs7806812	1.00[JPT][hapmap]
rs9639552	1.00[JPT][hapmap]
rs9639553	1.00[JPT][hapmap]
rs978447	1.00[JPT][hapmap]
rs986706	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13237776	HIBADH	Cis_1M	lymphoblastoid	RTeQTL
rs13237776	OGFRL1	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27704200-27711000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:27705000-27710000	Weak transcription	HepG2	liver
3	chr7:27709600-27711400	Enhancers	K562	blood
4	chr7:27709600-27711400	Enhancers	NHDF-Ad	bronchial

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