Variant report

Variant	rs11766968
Chromosome Location	chr7:96622615-96622616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96616855..96619482-chr7:96620505..96622998,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11769618	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957006	0.81[ASN][1000 genomes]
rs7807332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9769385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs982346	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11766968	MYH16	cis	cerebellum	SCAN
rs11766968	MBLAC1	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96621200-96622800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:96621400-96623000	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr7:96621400-96623400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:96621600-96622800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr7:96621600-96622800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr7:96621600-96622800	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr7:96621600-96623000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:96621800-96622800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:96622600-96622800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr7:96622600-96622800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr7:96622600-96622800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:96622600-96622800	Bivalent Enhancer	Adipose Nuclei	Adipose
13	chr7:96622600-96622800	Bivalent Enhancer	Fetal Stomach	stomach
14	chr7:96622600-96622800	Bivalent Enhancer	Ovary	ovary
15	chr7:96622600-96623000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr7:96622600-96623000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr7:96622600-96623000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr7:96622600-96623000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:96622600-96623000	Active TSS	Brain Germinal Matrix	brain
20	chr7:96622600-96623200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr7:96622600-96623400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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