Variant report

Variant	rs11769618
Chromosome Location	chr7:96621498-96621499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96618838..96621788-chr7:96624479..96627532,3	K562	blood:
2	chr7:96616855..96619482-chr7:96620505..96622998,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11766968	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957006	0.81[ASN][1000 genomes]
rs7807332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9769385	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs982346	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11769618	EPO	cis	parietal	SCAN
rs11769618	MYH16	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96621200-96621600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
2	chr7:96621200-96621800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr7:96621200-96622000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:96621200-96622400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:96621200-96622800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:96621400-96621600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
7	chr7:96621400-96621600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr7:96621400-96621600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr7:96621400-96621600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr7:96621400-96621600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr7:96621400-96621600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr7:96621400-96621600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr7:96621400-96621600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr7:96621400-96621600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
15	chr7:96621400-96621800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:96621400-96621800	Bivalent Enhancer	Colon Smooth Muscle	Colon
17	chr7:96621400-96622000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:96621400-96622000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
19	chr7:96621400-96622000	Bivalent Enhancer	Small Intestine	intestine
20	chr7:96621400-96622200	Bivalent Enhancer	Fetal Brain Male	brain
21	chr7:96621400-96622400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
22	chr7:96621400-96623000	Bivalent/Poised TSS	Fetal Brain Female	brain
23	chr7:96621400-96623400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links