Variant report

Variant	rs11787088
Chromosome Location	chr8:49665502-49665503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11777585	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779344	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779699	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11785222	1.00[CEU][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs12114072	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12114226	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938744	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17706472	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17712404	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761425	chr8:49658066-49669601	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11787088	HGF	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49661000-49668200	Weak transcription	Pancreas	Pancrea
2	chr8:49661400-49666000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:49661600-49666000	Weak transcription	Osteobl	bone
4	chr8:49663600-49666200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:49663600-49669600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:49664400-49665600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:49664400-49669000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:49664800-49665600	Enhancers	Lung	lung
9	chr8:49664800-49669400	Weak transcription	Spleen	Spleen
10	chr8:49665400-49666400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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