Variant report

Variant	rs17712404
Chromosome Location	chr8:49689978-49689979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11777585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785222	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11787088	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706472	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17712404	HGF	trans	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49690800	Weak transcription	Fetal Lung	lung
2	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
4	chr8:49686800-49690000	Weak transcription	Fetal Kidney	kidney
5	chr8:49687000-49690200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:49687000-49690400	Weak transcription	Pancreas	Pancrea
7	chr8:49687000-49693000	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:49688800-49691400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:49689000-49690600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:49689000-49691800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:49689200-49692400	Weak transcription	Aorta	Aorta
12	chr8:49689600-49692000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:49689800-49692200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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