Variant report

Variant	rs12114226
Chromosome Location	chr8:49691807-49691808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11777585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779344	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785222	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11787088	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706472	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17712404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49677600-49700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:49686600-49700400	Weak transcription	Esophagus	oesophagus
3	chr8:49687000-49693000	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:49689200-49692400	Weak transcription	Aorta	Aorta
5	chr8:49689600-49692000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:49689800-49692200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:49690000-49692200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:49690200-49692000	Enhancers	Fetal Stomach	stomach
9	chr8:49690600-49701200	Weak transcription	Ovary	ovary
10	chr8:49690800-49692200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:49691000-49692000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:49691000-49692000	Enhancers	Osteobl	bone
13	chr8:49691000-49692400	Weak transcription	Placenta	Placenta
14	chr8:49691000-49694400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:49691000-49700400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:49691200-49693200	Weak transcription	Pancreas	Pancrea
17	chr8:49691200-49693400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:49691200-49705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:49691400-49692000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:49691400-49692200	Enhancers	HSMMtube	muscle
21	chr8:49691400-49695400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:49691400-49695600	Weak transcription	Fetal Kidney	kidney
23	chr8:49691400-49699800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:49691600-49692200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:49691600-49699200	Weak transcription	Fetal Lung	lung
26	chr8:49691800-49692000	Enhancers	Adipose Nuclei	Adipose
27	chr8:49691800-49692600	Enhancers	Rectal Smooth Muscle	rectum
28	chr8:49691800-49692800	Weak transcription	NHLF	lung
29	chr8:49691800-49693800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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