Variant report

Variant	rs11788314
Chromosome Location	chr9:18140689-18140690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11787755	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11787918	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11788211	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11789982	1.00[ASN][1000 genomes]
rs11790235	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11790282	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790387	1.00[ASN][1000 genomes]
rs11790414	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11790830	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791252	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11794137	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794203	1.00[ASN][1000 genomes]
rs11794764	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794779	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795067	1.00[ASN][1000 genomes]
rs11795109	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11795249	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11795321	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16936468	1.00[ASN][1000 genomes]
rs17196795	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17198051	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17775838	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17788716	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1944745	1.00[ASN][1000 genomes]
rs4246140	1.00[ASN][1000 genomes]
rs55678641	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55742842	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55767089	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55768778	1.00[ASN][1000 genomes]
rs55879948	1.00[ASN][1000 genomes]
rs55924836	1.00[ASN][1000 genomes]
rs55941140	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55970620	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56290103	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56316407	1.00[ASN][1000 genomes]
rs59977859	1.00[ASN][1000 genomes]
rs72684909	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684911	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684912	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684932	1.00[ASN][1000 genomes]
rs72684934	1.00[ASN][1000 genomes]
rs72684935	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684943	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684944	1.00[ASN][1000 genomes]
rs72684945	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684948	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684960	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684967	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699447	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699461	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699464	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699473	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699475	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699476	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699477	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699483	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699484	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699502	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701514	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701516	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701533	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701535	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701538	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701541	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701542	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701543	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701544	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18138800-18141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:18139400-18142800	Weak transcription	Colon Smooth Muscle	Colon

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