Variant report

Variant	rs55768778
Chromosome Location	chr9:18238536-18238537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11787755	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787918	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788211	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788314	1.00[ASN][1000 genomes]
rs11789982	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790235	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790282	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11790387	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790414	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790830	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11791252	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794137	1.00[ASN][1000 genomes]
rs11794203	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794764	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11794779	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11795067	1.00[ASN][1000 genomes]
rs11795109	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795249	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795321	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936468	1.00[ASN][1000 genomes]
rs17196795	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17198051	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775838	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17788716	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944745	1.00[ASN][1000 genomes]
rs4246140	1.00[ASN][1000 genomes]
rs55678641	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55742842	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767089	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55879948	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55924836	1.00[ASN][1000 genomes]
rs55941140	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55970620	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56290103	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316407	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59977859	1.00[ASN][1000 genomes]
rs72684909	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684911	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684912	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684932	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684934	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684935	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684943	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684944	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684945	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684948	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684960	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684967	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699447	1.00[ASN][1000 genomes]
rs72699461	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699464	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699473	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699475	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699476	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699477	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699483	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699484	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72699502	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701514	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701516	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701533	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701535	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701538	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701541	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701542	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701543	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701544	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18225800-18260600	Weak transcription	Aorta	Aorta
2	chr9:18235200-18241000	Enhancers	Hela-S3	cervix
3	chr9:18236200-18238600	Enhancers	HUVEC	blood vessel
4	chr9:18237200-18238600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:18237200-18240200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:18237600-18239200	Enhancers	NHDF-Ad	bronchial
7	chr9:18237600-18239200	Enhancers	NHLF	lung
8	chr9:18237600-18240200	Enhancers	HMEC	breast
9	chr9:18237800-18238600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:18237800-18238600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:18237800-18238600	Flanking Active TSS	Osteobl	bone
12	chr9:18237800-18238800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr9:18237800-18239000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:18237800-18239200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:18237800-18239200	Enhancers	HSMMtube	muscle
16	chr9:18237800-18239400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:18237800-18239400	Enhancers	NHEK	skin
18	chr9:18237800-18240200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:18238000-18238600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr9:18238000-18238600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:18238000-18238800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:18238000-18239200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:18238200-18238600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:18238200-18238600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:18238200-18238600	Flanking Active TSS	NH-A	brain
26	chr9:18238200-18239000	Enhancers	A549	lung
27	chr9:18238400-18238600	Flanking Active TSS	HSMM	muscle

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