Variant report

Variant	rs72699464
Chromosome Location	chr9:18129634-18129635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11787755	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11787918	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11788211	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11788314	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789982	1.00[ASN][1000 genomes]
rs11790235	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11790282	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790387	1.00[ASN][1000 genomes]
rs11790414	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11790830	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791252	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11794137	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794203	1.00[ASN][1000 genomes]
rs11794764	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794779	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795067	1.00[ASN][1000 genomes]
rs11795109	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11795249	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11795321	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16936468	1.00[ASN][1000 genomes]
rs17196795	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17198051	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17775838	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17788716	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1944745	1.00[ASN][1000 genomes]
rs4246140	1.00[ASN][1000 genomes]
rs55678641	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55742842	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55767089	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55768778	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55879948	1.00[ASN][1000 genomes]
rs55924836	1.00[ASN][1000 genomes]
rs55941140	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55970620	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56290103	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56316407	1.00[ASN][1000 genomes]
rs59977859	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684909	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684911	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684912	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684932	1.00[ASN][1000 genomes]
rs72684934	1.00[ASN][1000 genomes]
rs72684935	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684943	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684944	1.00[ASN][1000 genomes]
rs72684945	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684948	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684960	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684967	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684969	0.85[AMR][1000 genomes]
rs72684970	0.85[AMR][1000 genomes]
rs72684974	0.85[AMR][1000 genomes]
rs72684975	0.85[AMR][1000 genomes]
rs72684976	0.85[AMR][1000 genomes]
rs72699447	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699461	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699473	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699475	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699476	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699477	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699483	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699484	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72699502	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701514	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701516	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701533	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701535	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701538	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701541	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701542	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701543	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72701544	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18126400-18130600	Enhancers	Colon Smooth Muscle	Colon
2	chr9:18127200-18129800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:18127600-18129800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:18127800-18138400	Weak transcription	Aorta	Aorta
5	chr9:18128600-18129800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:18128600-18129800	Weak transcription	Ovary	ovary
7	chr9:18128600-18133600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:18129600-18130000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr9:18129600-18131000	Enhancers	Stomach Smooth Muscle	stomach

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