Variant report

Variant	rs72684969
Chromosome Location	chr9:18254779-18254780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:18254620..18255832-chr9:18825877..18827696,5	MCF-7	breast:
2	chr9:18254775..18255482-chr9:18823832..18824683,3	MCF-7	breast:
3	chr9:18254776..18255758-chr9:18790832..18791755,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178031	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11787755	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11787918	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11788211	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11790235	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11790282	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11790414	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11790830	0.85[AMR][1000 genomes]
rs11791252	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11794764	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11794779	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11795109	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11795249	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11795321	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13286848	1.00[AFR][1000 genomes]
rs13299234	1.00[AFR][1000 genomes]
rs13299428	1.00[AFR][1000 genomes]
rs13301677	1.00[AFR][1000 genomes]
rs16936500	1.00[AFR][1000 genomes]
rs17196795	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17198051	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17775838	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17788716	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34106751	1.00[AFR][1000 genomes]
rs34263679	1.00[AFR][1000 genomes]
rs34308902	1.00[AFR][1000 genomes]
rs34536464	1.00[AFR][1000 genomes]
rs35046976	1.00[AFR][1000 genomes]
rs35124487	1.00[AFR][1000 genomes]
rs35132372	1.00[AFR][1000 genomes]
rs35289513	1.00[AFR][1000 genomes]
rs36073480	1.00[AFR][1000 genomes]
rs4512483	1.00[AFR][1000 genomes]
rs55678641	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55742842	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55767089	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55879948	0.81[EUR][1000 genomes]
rs55941140	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55970620	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56290103	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56307628	1.00[AFR][1000 genomes]
rs71506866	1.00[AFR][1000 genomes]
rs72684909	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72684911	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72684912	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72684932	0.81[EUR][1000 genomes]
rs72684935	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684943	0.85[AMR][1000 genomes]
rs72684945	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684948	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684960	0.81[EUR][1000 genomes]
rs72684965	1.00[AFR][1000 genomes]
rs72684967	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72684970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684971	0.90[EUR][1000 genomes]
rs72684974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72684976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72684978	1.00[AFR][1000 genomes]
rs72684981	1.00[AFR][1000 genomes]
rs72684982	1.00[AFR][1000 genomes]
rs72684987	1.00[AFR][1000 genomes]
rs72686828	1.00[AFR][1000 genomes]
rs72686838	1.00[AFR][1000 genomes]
rs72699447	1.00[AFR][1000 genomes]
rs72699461	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699464	0.85[AMR][1000 genomes]
rs72699473	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699475	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699476	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699477	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699483	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699484	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72699490	1.00[AFR][1000 genomes]
rs72699502	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701514	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701516	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701533	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701535	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701538	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701541	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701542	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701543	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72701544	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18225800-18260600	Weak transcription	Aorta	Aorta
2	chr9:18250600-18255400	Weak transcription	Fetal Heart	heart
3	chr9:18250600-18255400	Weak transcription	Osteobl	bone
4	chr9:18250600-18255800	Weak transcription	NH-A	brain
5	chr9:18250800-18255400	Weak transcription	NHDF-Ad	bronchial
6	chr9:18250800-18255600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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