Variant report

Variant	rs35289513
Chromosome Location	chr9:18263813-18263814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11787755	1.00[AFR][1000 genomes]
rs11788211	1.00[AFR][1000 genomes]
rs11790235	1.00[AFR][1000 genomes]
rs11790282	1.00[AFR][1000 genomes]
rs11790414	1.00[AFR][1000 genomes]
rs11794764	1.00[AFR][1000 genomes]
rs11794779	1.00[AFR][1000 genomes]
rs11795109	1.00[AFR][1000 genomes]
rs13286848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13287745	0.98[EUR][1000 genomes]
rs13288027	0.98[EUR][1000 genomes]
rs13288253	0.92[EUR][1000 genomes]
rs13289416	0.92[EUR][1000 genomes]
rs13292897	0.86[EUR][1000 genomes]
rs13294282	0.86[EUR][1000 genomes]
rs13299234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13299428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13301672	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13301677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16936500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16936525	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16936527	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16936553	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17196795	1.00[AFR][1000 genomes]
rs17198051	1.00[AFR][1000 genomes]
rs17775838	1.00[AFR][1000 genomes]
rs2585578	0.98[EUR][1000 genomes]
rs34106751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34154171	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34201861	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34263413	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34263679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34308902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34536464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35046976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35124487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35132372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35622845	0.84[EUR][1000 genomes]
rs35641978	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35762648	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36073480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4512483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55678641	1.00[AFR][1000 genomes]
rs55742842	1.00[AFR][1000 genomes]
rs55767089	1.00[AFR][1000 genomes]
rs55928170	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55941140	1.00[AFR][1000 genomes]
rs55970620	1.00[AFR][1000 genomes]
rs56290103	1.00[AFR][1000 genomes]
rs56307628	1.00[AFR][1000 genomes]
rs56391525	0.92[EUR][1000 genomes]
rs66916621	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71506866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72684909	1.00[AFR][1000 genomes]
rs72684911	1.00[AFR][1000 genomes]
rs72684912	1.00[AFR][1000 genomes]
rs72684948	1.00[AFR][1000 genomes]
rs72684965	1.00[AFR][1000 genomes]
rs72684967	1.00[AFR][1000 genomes]
rs72684969	1.00[AFR][1000 genomes]
rs72684970	1.00[AFR][1000 genomes]
rs72684974	1.00[AFR][1000 genomes]
rs72684976	1.00[AFR][1000 genomes]
rs72684978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72684981	1.00[AFR][1000 genomes]
rs72684982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72684987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72686828	1.00[AFR][1000 genomes]
rs72686838	1.00[AFR][1000 genomes]
rs72699447	1.00[AFR][1000 genomes]
rs72699461	1.00[AFR][1000 genomes]
rs72699473	1.00[AFR][1000 genomes]
rs72699475	1.00[AFR][1000 genomes]
rs72699476	1.00[AFR][1000 genomes]
rs72699477	1.00[AFR][1000 genomes]
rs72699483	1.00[AFR][1000 genomes]
rs72699484	1.00[AFR][1000 genomes]
rs72699490	1.00[AFR][1000 genomes]
rs72699502	1.00[AFR][1000 genomes]
rs72701514	1.00[AFR][1000 genomes]
rs72701516	1.00[AFR][1000 genomes]
rs72701533	1.00[AFR][1000 genomes]
rs72701535	1.00[AFR][1000 genomes]
rs72701538	1.00[AFR][1000 genomes]
rs72701541	1.00[AFR][1000 genomes]
rs72701542	1.00[AFR][1000 genomes]
rs72701543	1.00[AFR][1000 genomes]
rs72701544	1.00[AFR][1000 genomes]
rs7862758	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18256800-18265200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:18257000-18267200	Weak transcription	NHDF-Ad	bronchial
3	chr9:18261400-18266800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:18261600-18267400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:18261800-18265000	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:18261800-18266200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:18262200-18267400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:18262400-18267400	Weak transcription	HMEC	breast
9	chr9:18262400-18268400	Weak transcription	NHEK	skin
10	chr9:18262800-18264000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:18263000-18264000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:18263200-18264200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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