Variant report

Variant	rs13301672
Chromosome Location	chr9:18260110-18260111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13286848	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13287745	0.96[EUR][1000 genomes]
rs13288027	0.96[EUR][1000 genomes]
rs13288253	0.86[EUR][1000 genomes]
rs13289416	0.86[EUR][1000 genomes]
rs13292897	0.84[EUR][1000 genomes]
rs13294282	0.84[EUR][1000 genomes]
rs13299234	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13299428	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13301677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16936500	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16936525	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16936527	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16936553	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2585578	0.96[EUR][1000 genomes]
rs34106751	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34154171	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34201861	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34263413	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34263679	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34308902	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34536464	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35046976	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35124487	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35132372	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35289513	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35622845	0.83[EUR][1000 genomes]
rs35641978	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35762648	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36073480	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4512483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55928170	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56391525	0.94[EUR][1000 genomes]
rs66916621	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71506866	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72684978	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72684982	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72684987	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7862758	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18225800-18260600	Weak transcription	Aorta	Aorta
2	chr9:18255200-18260400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:18256000-18260400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:18256000-18260400	Weak transcription	Fetal Stomach	stomach
5	chr9:18256200-18261200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:18256400-18260600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:18256800-18260200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:18256800-18260200	Weak transcription	Osteobl	bone
9	chr9:18256800-18260400	Weak transcription	Fetal Heart	heart
10	chr9:18256800-18260400	Weak transcription	Right Atrium	heart
11	chr9:18256800-18260800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:18256800-18260800	Weak transcription	Fetal Lung	lung
13	chr9:18256800-18265200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:18257000-18260400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:18257000-18260400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:18257000-18267200	Weak transcription	NHDF-Ad	bronchial
17	chr9:18260000-18260400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:18260000-18260400	Enhancers	Brain Anterior Caudate	brain
19	chr9:18260000-18260800	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr9:18260000-18261800	Enhancers	Colon Smooth Muscle	Colon

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