Variant report
Variant | rs13287745 |
---|---|
Chromosome Location | chr9:18270611-18270612 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13286848 | 0.92[EUR][1000 genomes] |
rs13288027 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13288253 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13289416 | 0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13292897 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13294282 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13298905 | 0.83[AFR][1000 genomes] |
rs13299234 | 0.92[EUR][1000 genomes] |
rs13299428 | 0.92[EUR][1000 genomes] |
rs13301672 | 0.96[EUR][1000 genomes] |
rs13301677 | 0.96[EUR][1000 genomes] |
rs16936498 | 1.00[ASN][1000 genomes] |
rs16936500 | 1.00[EUR][1000 genomes] |
rs16936525 | 0.92[EUR][1000 genomes] |
rs16936527 | 0.92[EUR][1000 genomes] |
rs16936553 | 0.94[EUR][1000 genomes] |
rs2585578 | 1.00[EUR][1000 genomes] |
rs34106751 | 1.00[EUR][1000 genomes] |
rs34154171 | 1.00[EUR][1000 genomes] |
rs34201861 | 1.00[EUR][1000 genomes] |
rs34263413 | 0.92[EUR][1000 genomes] |
rs34263679 | 1.00[EUR][1000 genomes] |
rs34308902 | 1.00[EUR][1000 genomes] |
rs34536464 | 1.00[EUR][1000 genomes] |
rs35046976 | 1.00[EUR][1000 genomes] |
rs35124487 | 0.94[EUR][1000 genomes] |
rs35132372 | 0.94[EUR][1000 genomes] |
rs35289513 | 0.98[EUR][1000 genomes] |
rs35622845 | 0.86[EUR][1000 genomes] |
rs35641978 | 1.00[EUR][1000 genomes] |
rs35762648 | 1.00[EUR][1000 genomes] |
rs36073480 | 1.00[EUR][1000 genomes] |
rs4512483 | 0.90[EUR][1000 genomes] |
rs55928170 | 0.94[EUR][1000 genomes] |
rs56391525 | 0.94[EUR][1000 genomes] |
rs66916621 | 0.96[EUR][1000 genomes] |
rs71506866 | 0.94[EUR][1000 genomes] |
rs72684978 | 0.98[EUR][1000 genomes] |
rs72684982 | 1.00[EUR][1000 genomes] |
rs72684987 | 1.00[EUR][1000 genomes] |
rs73643211 | 0.86[ASN][1000 genomes] |
rs7862758 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1021605 | chr9:18002205-18271109 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv892682 | chr9:18166112-18272700 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv831522 | chr9:18231982-18459492 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv491807 | chr9:18243672-19009770 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
5 | esv2764161 | chr9:18247433-18443060 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv892684 | chr9:18261485-18401585 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1020662 | chr9:18270455-18295314 | Weak transcription ZNF genes & repeats Enhancers Active TSS | lncRNA | n/a | inside rSNPs | diseases |
8 | esv3408082 | chr9:18270458-18270629 | Weak transcription ZNF genes & repeats Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:18269200-18271000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
2 | chr9:18269400-18274400 | Weak transcription | HUVEC | blood vessel |
3 | chr9:18270200-18272600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
4 | chr9:18270600-18270800 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |