Variant report

Variant	rs35132372
Chromosome Location	chr9:18296990-18296991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11787755	1.00[AFR][1000 genomes]
rs11788211	1.00[AFR][1000 genomes]
rs11790235	1.00[AFR][1000 genomes]
rs11790414	1.00[AFR][1000 genomes]
rs11794764	1.00[AFR][1000 genomes]
rs11794779	1.00[AFR][1000 genomes]
rs11795109	1.00[AFR][1000 genomes]
rs13286848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13287745	0.94[EUR][1000 genomes]
rs13288027	0.94[EUR][1000 genomes]
rs13288253	0.88[EUR][1000 genomes]
rs13289416	0.88[EUR][1000 genomes]
rs13292897	0.82[EUR][1000 genomes]
rs13294282	0.82[EUR][1000 genomes]
rs13299234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13299428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13301672	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13301677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16936500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16936525	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16936527	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16936553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17198051	1.00[AFR][1000 genomes]
rs2585578	0.94[EUR][1000 genomes]
rs34106751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34154171	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34201861	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34263413	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34263679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34308902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34536464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35046976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35124487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35289513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35622845	0.81[EUR][1000 genomes]
rs35641978	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35762648	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36073480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4512483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55678641	1.00[AFR][1000 genomes]
rs55742842	1.00[AFR][1000 genomes]
rs55767089	1.00[AFR][1000 genomes]
rs55928170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55941140	1.00[AFR][1000 genomes]
rs55970620	1.00[AFR][1000 genomes]
rs56290103	1.00[AFR][1000 genomes]
rs56307628	1.00[AFR][1000 genomes]
rs56391525	0.88[EUR][1000 genomes]
rs66916621	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71506866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72684909	1.00[AFR][1000 genomes]
rs72684911	1.00[AFR][1000 genomes]
rs72684912	1.00[AFR][1000 genomes]
rs72684948	1.00[AFR][1000 genomes]
rs72684965	1.00[AFR][1000 genomes]
rs72684967	1.00[AFR][1000 genomes]
rs72684969	1.00[AFR][1000 genomes]
rs72684970	1.00[AFR][1000 genomes]
rs72684974	1.00[AFR][1000 genomes]
rs72684976	1.00[AFR][1000 genomes]
rs72684978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72684981	1.00[AFR][1000 genomes]
rs72684982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72684987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72686828	1.00[AFR][1000 genomes]
rs72686838	1.00[AFR][1000 genomes]
rs72699502	1.00[AFR][1000 genomes]
rs72701514	1.00[AFR][1000 genomes]
rs72701516	1.00[AFR][1000 genomes]
rs72701533	1.00[AFR][1000 genomes]
rs72701535	1.00[AFR][1000 genomes]
rs72701538	1.00[AFR][1000 genomes]
rs72701541	1.00[AFR][1000 genomes]
rs72701542	1.00[AFR][1000 genomes]
rs72701543	1.00[AFR][1000 genomes]
rs72701544	1.00[AFR][1000 genomes]
rs7862758	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1015972	chr9:18272700-18299446	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892685	chr9:18273100-18302439	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv892686	chr9:18273100-18328341	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18293400-18298600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:18294600-18297000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:18294600-18297000	Weak transcription	Fetal Heart	heart
4	chr9:18295400-18297400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:18296600-18297000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:18296600-18297000	Enhancers	HUVEC	blood vessel
7	chr9:18296600-18297000	Enhancers	NHEK	skin
8	chr9:18296600-18297200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:18296600-18297200	Enhancers	HSMMtube	muscle
10	chr9:18296600-18297800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:18296600-18297800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:18296600-18297800	Enhancers	Aorta	Aorta
13	chr9:18296600-18297800	Enhancers	HSMM	muscle
14	chr9:18296600-18297800	Enhancers	NHLF	lung
15	chr9:18296600-18298200	Enhancers	HMEC	breast
16	chr9:18296800-18297000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:18296800-18297000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:18296800-18297000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:18296800-18297000	Enhancers	NH-A	brain
20	chr9:18296800-18297200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:18296800-18297200	Flanking Active TSS	NHDF-Ad	bronchial
22	chr9:18296800-18297400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:18296800-18297600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:18296800-18297600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:18296800-18297600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:18296800-18297600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:18296800-18297800	Enhancers	Hela-S3	cervix
28	chr9:18296800-18297800	Flanking Active TSS	Osteobl	bone
29	chr9:18296800-18298000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr9:18296800-18298000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr9:18296800-18298200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:18296800-18298400	Enhancers	Fetal Lung	lung

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