Variant report

Variant	rs2585578
Chromosome Location	chr9:18267185-18267186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13286848	0.92[EUR][1000 genomes]
rs13287745	1.00[EUR][1000 genomes]
rs13288027	1.00[EUR][1000 genomes]
rs13288253	0.90[EUR][1000 genomes]
rs13289416	0.90[EUR][1000 genomes]
rs13292897	0.88[EUR][1000 genomes]
rs13294282	0.88[EUR][1000 genomes]
rs13299234	0.92[EUR][1000 genomes]
rs13299428	0.92[EUR][1000 genomes]
rs13301672	0.96[EUR][1000 genomes]
rs13301677	0.96[EUR][1000 genomes]
rs16936500	1.00[EUR][1000 genomes]
rs16936525	0.92[EUR][1000 genomes]
rs16936527	0.92[EUR][1000 genomes]
rs16936553	0.94[EUR][1000 genomes]
rs34106751	1.00[EUR][1000 genomes]
rs34154171	1.00[EUR][1000 genomes]
rs34201861	1.00[EUR][1000 genomes]
rs34263413	0.92[EUR][1000 genomes]
rs34263679	1.00[EUR][1000 genomes]
rs34308902	1.00[EUR][1000 genomes]
rs34536464	1.00[EUR][1000 genomes]
rs35046976	1.00[EUR][1000 genomes]
rs35124487	0.94[EUR][1000 genomes]
rs35132372	0.94[EUR][1000 genomes]
rs35289513	0.98[EUR][1000 genomes]
rs35622845	0.86[EUR][1000 genomes]
rs35641978	1.00[EUR][1000 genomes]
rs35762648	1.00[EUR][1000 genomes]
rs36073480	1.00[EUR][1000 genomes]
rs4512483	0.90[EUR][1000 genomes]
rs55928170	0.94[EUR][1000 genomes]
rs56391525	0.94[EUR][1000 genomes]
rs66916621	0.96[EUR][1000 genomes]
rs71506866	0.94[EUR][1000 genomes]
rs72684978	0.98[EUR][1000 genomes]
rs72684982	1.00[EUR][1000 genomes]
rs72684987	1.00[EUR][1000 genomes]
rs7862758	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18257000-18267200	Weak transcription	NHDF-Ad	bronchial
2	chr9:18261600-18267400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:18262200-18267400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:18262400-18267400	Weak transcription	HMEC	breast
5	chr9:18262400-18268400	Weak transcription	NHEK	skin
6	chr9:18265200-18270200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:18266200-18269400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:18266400-18267200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:18266800-18267600	Enhancers	Colon Smooth Muscle	Colon
10	chr9:18266800-18268400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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