Variant report

Variant	rs13289416
Chromosome Location	chr9:18270885-18270886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13286848	0.82[EUR][1000 genomes]
rs13287745	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288027	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13292897	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13294282	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298905	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13299234	0.82[EUR][1000 genomes]
rs13299428	0.82[EUR][1000 genomes]
rs13301672	0.86[EUR][1000 genomes]
rs13301677	0.86[EUR][1000 genomes]
rs16936498	1.00[ASN][1000 genomes]
rs16936500	0.90[EUR][1000 genomes]
rs16936525	0.86[EUR][1000 genomes]
rs16936527	0.86[EUR][1000 genomes]
rs16936553	0.88[EUR][1000 genomes]
rs2585578	0.90[EUR][1000 genomes]
rs34106751	0.90[EUR][1000 genomes]
rs34154171	0.90[EUR][1000 genomes]
rs34201861	0.90[EUR][1000 genomes]
rs34263413	0.86[EUR][1000 genomes]
rs34263679	0.90[EUR][1000 genomes]
rs34308902	0.90[EUR][1000 genomes]
rs34536464	0.90[EUR][1000 genomes]
rs35046976	0.90[EUR][1000 genomes]
rs35124487	0.88[EUR][1000 genomes]
rs35132372	0.88[EUR][1000 genomes]
rs35289513	0.92[EUR][1000 genomes]
rs35622845	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35641978	0.90[EUR][1000 genomes]
rs35762648	0.90[EUR][1000 genomes]
rs36073480	0.90[EUR][1000 genomes]
rs4512483	0.84[EUR][1000 genomes]
rs55928170	0.88[EUR][1000 genomes]
rs56391525	0.84[EUR][1000 genomes]
rs66916621	0.86[EUR][1000 genomes]
rs71506866	0.84[EUR][1000 genomes]
rs72684978	0.88[EUR][1000 genomes]
rs72684982	0.90[EUR][1000 genomes]
rs72684987	0.90[EUR][1000 genomes]
rs73643211	0.86[ASN][1000 genomes]
rs7862758	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1020662	chr9:18270455-18295314	Weak transcription ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18269200-18271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:18269400-18274400	Weak transcription	HUVEC	blood vessel
3	chr9:18270200-18272600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:18270800-18272200	Weak transcription	Osteobl	bone
5	chr9:18270800-18272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links