Variant report

Variant	rs72686838
Chromosome Location	chr9:18312345-18312346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11787755	1.00[AFR][1000 genomes]
rs11788211	1.00[AFR][1000 genomes]
rs11790235	1.00[AFR][1000 genomes]
rs11790414	1.00[AFR][1000 genomes]
rs11794764	1.00[AFR][1000 genomes]
rs11794779	1.00[AFR][1000 genomes]
rs11795109	1.00[AFR][1000 genomes]
rs13286848	1.00[AFR][1000 genomes]
rs13299234	1.00[AFR][1000 genomes]
rs13299428	1.00[AFR][1000 genomes]
rs13301677	1.00[AFR][1000 genomes]
rs16936500	1.00[AFR][1000 genomes]
rs17198051	1.00[AFR][1000 genomes]
rs17791003	0.94[AMR][1000 genomes]
rs34106751	1.00[AFR][1000 genomes]
rs34263679	1.00[AFR][1000 genomes]
rs34308902	1.00[AFR][1000 genomes]
rs34536464	1.00[AFR][1000 genomes]
rs35046976	1.00[AFR][1000 genomes]
rs35124487	1.00[AFR][1000 genomes]
rs35132372	1.00[AFR][1000 genomes]
rs35289513	1.00[AFR][1000 genomes]
rs36073480	1.00[AFR][1000 genomes]
rs4512483	1.00[AFR][1000 genomes]
rs55678641	1.00[AFR][1000 genomes]
rs55728250	0.84[AMR][1000 genomes]
rs55742842	1.00[AFR][1000 genomes]
rs55767089	1.00[AFR][1000 genomes]
rs55941140	1.00[AFR][1000 genomes]
rs55970620	1.00[AFR][1000 genomes]
rs56067157	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56290103	1.00[AFR][1000 genomes]
rs56307628	1.00[AFR][1000 genomes]
rs71506866	1.00[AFR][1000 genomes]
rs72684909	1.00[AFR][1000 genomes]
rs72684911	1.00[AFR][1000 genomes]
rs72684912	1.00[AFR][1000 genomes]
rs72684948	1.00[AFR][1000 genomes]
rs72684965	1.00[AFR][1000 genomes]
rs72684967	1.00[AFR][1000 genomes]
rs72684969	1.00[AFR][1000 genomes]
rs72684970	1.00[AFR][1000 genomes]
rs72684974	1.00[AFR][1000 genomes]
rs72684976	1.00[AFR][1000 genomes]
rs72684978	1.00[AFR][1000 genomes]
rs72684981	1.00[AFR][1000 genomes]
rs72684982	1.00[AFR][1000 genomes]
rs72684987	1.00[AFR][1000 genomes]
rs72686828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72686842	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72686857	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72701514	1.00[AFR][1000 genomes]
rs72701516	1.00[AFR][1000 genomes]
rs72701533	1.00[AFR][1000 genomes]
rs72701535	1.00[AFR][1000 genomes]
rs72701538	1.00[AFR][1000 genomes]
rs72701541	1.00[AFR][1000 genomes]
rs72701542	1.00[AFR][1000 genomes]
rs72701543	1.00[AFR][1000 genomes]
rs72701544	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892686	chr9:18273100-18328341	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv430001	chr9:18301116-18346392	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv982617	chr9:18303073-18318205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18305400-18315600	Weak transcription	Gastric	stomach
2	chr9:18306000-18315200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:18306000-18315200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:18311400-18312800	Enhancers	Fetal Heart	heart

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