Variant report

Variant	rs11792823
Chromosome Location	chr9:118244374-118244375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10116195	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10124685	1.00[JPT][hapmap]
rs10739445	0.81[AFR][1000 genomes]
rs10817756	0.87[JPT][hapmap]
rs10817758	0.94[JPT][hapmap]
rs10817774	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982719	0.93[JPT][hapmap]
rs10982724	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs10982725	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs10982743	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10982755	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10982757	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982762	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982764	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792306	0.86[EUR][1000 genomes]
rs11792811	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795062	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12238100	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2067094	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2188048	0.93[EUR][1000 genomes]
rs34976516	0.91[EUR][1000 genomes]
rs3750505	0.92[CEU][hapmap];0.94[JPT][hapmap]
rs4978641	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6478177	0.91[EUR][1000 genomes]
rs6478178	0.91[EUR][1000 genomes]
rs6478179	0.91[EUR][1000 genomes]
rs7018671	0.83[CEU][hapmap];0.87[JPT][hapmap]
rs7029620	0.89[EUR][1000 genomes]
rs7040283	0.84[EUR][1000 genomes]
rs7040762	0.86[EUR][1000 genomes]
rs7048279	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7848629	0.94[EUR][1000 genomes]
rs7853784	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854183	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7860907	0.94[EUR][1000 genomes]
rs7864886	0.94[EUR][1000 genomes]
rs7865558	0.91[EUR][1000 genomes]
rs7868506	0.94[EUR][1000 genomes]
rs7869139	0.94[EUR][1000 genomes]
rs7871020	0.90[EUR][1000 genomes]
rs7871775	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299225	0.94[EUR][1000 genomes]
rs9299226	0.89[EUR][1000 genomes]
rs9299228	0.91[EUR][1000 genomes]
rs9408863	1.00[JPT][hapmap]
rs9408864	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs9408865	0.86[EUR][1000 genomes]
rs9408866	0.85[ASN][1000 genomes]
rs9408867	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9408869	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9408870	0.94[EUR][1000 genomes]
rs9409148	1.00[JPT][hapmap]
rs9409149	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs9409154	0.83[ASN][1000 genomes]
rs9409155	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9409156	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9409159	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9409164	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409165	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9409166	0.88[EUR][1000 genomes]
rs976734	0.86[EUR][1000 genomes]
rs981911	0.86[EUR][1000 genomes]
rs9919008	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893770	chr9:118213502-118299750	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv893771	chr9:118244107-118332688	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118237600-118257000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:118238200-118269400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:118240200-118249000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:118241400-118269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:118241800-118244400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:118242000-118244400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:118242000-118260600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:118242400-118244400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:118242400-118244800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:118242600-118245200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:118243800-118244400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
12	chr9:118244000-118244400	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:118244200-118244400	Genic enhancers	H9 Cell Line	embryonic stem cell
14	chr9:118244200-118244400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:118244200-118244600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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