Variant report

Variant	rs2067094
Chromosome Location	chr9:118200857-118200858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10116195	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10817774	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982724	0.84[EUR][1000 genomes]
rs10982725	0.83[EUR][1000 genomes]
rs10982726	0.82[EUR][1000 genomes]
rs10982743	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982755	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982757	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982762	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982764	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11792811	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11792823	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11795062	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12238100	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2188048	0.83[EUR][1000 genomes]
rs34976516	0.82[EUR][1000 genomes]
rs3750505	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6478177	0.82[EUR][1000 genomes]
rs6478178	0.82[EUR][1000 genomes]
rs6478179	0.82[EUR][1000 genomes]
rs7029620	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7040283	0.89[EUR][1000 genomes]
rs7040762	0.91[EUR][1000 genomes]
rs7048279	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7848629	0.84[EUR][1000 genomes]
rs7853784	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7854183	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7860907	0.84[EUR][1000 genomes]
rs7864886	0.84[EUR][1000 genomes]
rs7865558	0.82[EUR][1000 genomes]
rs7868506	0.84[EUR][1000 genomes]
rs7869139	0.84[EUR][1000 genomes]
rs7871020	0.83[EUR][1000 genomes]
rs7871775	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9299225	0.84[EUR][1000 genomes]
rs9299226	0.80[EUR][1000 genomes]
rs9299228	0.82[EUR][1000 genomes]
rs9408864	0.83[EUR][1000 genomes]
rs9408865	0.91[EUR][1000 genomes]
rs9408866	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9408867	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9408869	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9408870	0.84[EUR][1000 genomes]
rs9409149	0.83[EUR][1000 genomes]
rs9409150	0.83[EUR][1000 genomes]
rs9409154	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409155	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9409156	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9409159	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9409164	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9409165	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs976734	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs981911	0.91[EUR][1000 genomes]
rs9919008	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118192800-118208000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118196400-118207200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:118198800-118216000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:118200000-118202000	Weak transcription	Fetal Kidney	kidney
5	chr9:118200400-118204400	Weak transcription	Fetal Lung	lung
6	chr9:118200600-118201600	Weak transcription	Fetal Stomach	stomach

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