Variant report

Variant	rs9408867
Chromosome Location	chr9:118209531-118209532
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10116195	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817774	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982743	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982755	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982757	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982762	0.90[ASN][1000 genomes]
rs10982764	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11792811	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11792823	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11795062	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12238100	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2067094	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4979535	0.81[AFR][1000 genomes]
rs7029620	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7040283	0.83[ASN][1000 genomes]
rs7040762	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7048279	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853784	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854183	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7871775	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9408865	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9408866	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9408869	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409154	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9409155	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409159	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409164	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9409165	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs976734	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs981911	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118198800-118216000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:118208400-118222800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:118209200-118209800	Weak transcription	Fetal Lung	lung

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