Variant report

Variant	rs7854183
Chromosome Location	chr9:118222879-118222880
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10116195	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10817774	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982724	0.81[EUR][1000 genomes]
rs10982725	0.80[EUR][1000 genomes]
rs10982743	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982755	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982757	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982762	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982764	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11792306	0.84[EUR][1000 genomes]
rs11792811	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11792823	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11795062	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12238100	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2067094	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2188048	0.90[EUR][1000 genomes]
rs34976516	0.89[EUR][1000 genomes]
rs3750505	0.81[EUR][1000 genomes]
rs4978641	0.85[EUR][1000 genomes]
rs6478177	0.89[EUR][1000 genomes]
rs6478178	0.89[EUR][1000 genomes]
rs6478179	0.89[EUR][1000 genomes]
rs7029620	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7040283	0.86[EUR][1000 genomes]
rs7040762	0.89[EUR][1000 genomes]
rs7048279	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7848629	0.91[EUR][1000 genomes]
rs7853784	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7860907	0.91[EUR][1000 genomes]
rs7864886	0.91[EUR][1000 genomes]
rs7865558	0.89[EUR][1000 genomes]
rs7868506	0.91[EUR][1000 genomes]
rs7869139	0.91[EUR][1000 genomes]
rs7871020	0.88[EUR][1000 genomes]
rs7871775	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299225	0.91[EUR][1000 genomes]
rs9299226	0.87[EUR][1000 genomes]
rs9299228	0.89[EUR][1000 genomes]
rs9408864	0.80[EUR][1000 genomes]
rs9408865	0.89[EUR][1000 genomes]
rs9408866	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9408867	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9408869	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9408870	0.91[EUR][1000 genomes]
rs9409149	0.80[EUR][1000 genomes]
rs9409150	0.80[EUR][1000 genomes]
rs9409154	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9409155	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409156	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409159	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9409164	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9409165	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9409166	0.86[EUR][1000 genomes]
rs976734	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs981911	0.89[EUR][1000 genomes]
rs9919008	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893770	chr9:118213502-118299750	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118213800-118223000	Weak transcription	Aorta	Aorta
2	chr9:118215600-118224800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:118219600-118223000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:118219800-118223000	Weak transcription	Adipose Nuclei	Adipose
5	chr9:118222400-118224200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118222600-118223200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:118222800-118223000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:118222800-118223000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:118222800-118223200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:118222800-118223200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:118222800-118223400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:118222800-118223400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:118222800-118223400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:118222800-118224000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:118222800-118224600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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