The 2.0 version of rSNPBase

Variant report

Variant rs11799556
Chromosome Location chr1:212977397-212977398
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212965800-212992600 Weak transcription Lung lung
2 chr1:212966000-212981200 Weak transcription Esophagus oesophagus
3 chr1:212966000-212983000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:212966000-212997400 Weak transcription Aorta Aorta
5 chr1:212966200-212979800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:212966400-212977400 Weak transcription Hela-S3 cervix
7 chr1:212966400-212984000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:212966400-212985600 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:212966400-212988200 Weak transcription Fetal Heart heart
10 chr1:212966400-212989600 Weak transcription Fetal Brain Male brain
11 chr1:212966400-212990200 Weak transcription Right Ventricle heart
12 chr1:212966800-212977600 Weak transcription Brain Germinal Matrix brain
13 chr1:212966800-212989600 Weak transcription Psoas Muscle Psoas
14 chr1:212967000-212979000 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:212967000-212984400 Weak transcription Spleen Spleen
16 chr1:212967200-212984000 Weak transcription NHDF-Ad bronchial
17 chr1:212967200-212988400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:212967200-212989000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:212967200-212989600 Weak transcription NHLF lung
20 chr1:212968000-212980000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:212968000-212987400 Weak transcription Fetal Intestine Large intestine
22 chr1:212968400-212988000 Weak transcription Stomach Mucosa stomach
23 chr1:212968600-212980200 Weak transcription HUVEC blood vessel
24 chr1:212969000-212980000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:212969000-212980000 Strong transcription Dnd41 blood
26 chr1:212969000-212982600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:212969000-212982600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr1:212969000-212983000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr1:212969400-212978600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:212969600-212989000 Weak transcription HepG2 liver
31 chr1:212969600-212993000 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr1:212970600-212977600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:212970600-212977800 Weak transcription Colon Smooth Muscle Colon
34 chr1:212970600-212982800 Weak transcription Ovary ovary
35 chr1:212970600-212985200 Weak transcription Pancreas Pancrea
36 chr1:212970600-212989600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:212971000-212989200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:212971200-212977400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr1:212971200-212979200 Weak transcription Muscle Satellite Cultured Cells --
40 chr1:212971200-212983800 Weak transcription NH-A brain
41 chr1:212971200-212990200 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:212971400-212987600 Weak transcription Small Intestine intestine
43 chr1:212971400-212987800 Weak transcription A549 lung
44 chr1:212971600-212988000 Weak transcription Fetal Muscle Trunk muscle
45 chr1:212972000-212987800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr1:212972400-212979200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr1:212972400-212983000 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr1:212972400-212987800 Weak transcription H1 Cell Line embryonic stem cell
49 chr1:212972400-212993600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:212972600-212977600 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015