The 2.0 version of rSNPBase

Variant report

Variant rs55827218
Chromosome Location chr1:212923536-212923537
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212895400-212926400 Weak transcription Esophagus oesophagus
2 chr1:212895400-212964600 Weak transcription Pancreas Pancrea
3 chr1:212895600-212964600 Weak transcription Gastric stomach
4 chr1:212895800-212925600 Weak transcription Small Intestine intestine
5 chr1:212895800-212926200 Weak transcription Hela-S3 cervix
6 chr1:212898800-212934000 Weak transcription Fetal Muscle Trunk muscle
7 chr1:212899800-212926400 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:212900400-212927600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr1:212900400-212932600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:212900400-212936200 Weak transcription Aorta Aorta
11 chr1:212901400-212954000 Weak transcription NH-A brain
12 chr1:212902200-212941800 Weak transcription Fetal Kidney kidney
13 chr1:212902600-212943600 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr1:212903600-212926400 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:212904800-212926200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr1:212908000-212933200 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:212912000-212935800 Weak transcription K562 blood
18 chr1:212912200-212925800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:212915000-212925800 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr1:212915400-212925600 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:212915400-212932600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:212915400-212933400 Weak transcription Ovary ovary
23 chr1:212915400-212934400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:212915400-212936000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:212915400-212942000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:212917400-212926400 Weak transcription Thymus Thymus
27 chr1:212917600-212931200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr1:212917800-212926000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:212918400-212929400 Weak transcription Fetal Stomach stomach
30 chr1:212918800-212930400 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr1:212919200-212925800 Weak transcription Primary hematopoietic stem cells blood
32 chr1:212919600-212926400 Weak transcription Right Atrium heart
33 chr1:212920000-212929200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:212920600-212929400 Weak transcription Fetal Intestine Small intestine
35 chr1:212921000-212929400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:212922200-212939600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:212922600-212924000 Enhancers Primary T cells fromperipheralblood blood
38 chr1:212922600-212924000 Enhancers Primary T helper cells fromperipheralblood blood
39 chr1:212922600-212924000 Flanking Active TSS GM12878-XiMat blood
40 chr1:212922800-212923800 Enhancers Primary T killer memory cells from peripheral blood blood
41 chr1:212922800-212924000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
42 chr1:212923000-212923600 Enhancers Brain Anterior Caudate brain
43 chr1:212923000-212923800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:212923000-212923800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:212923000-212923800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:212923000-212923800 Enhancers A549 lung
47 chr1:212923000-212923800 Enhancers HSMM muscle
48 chr1:212923000-212924000 Enhancers Primary B cells from cord blood blood
49 chr1:212923000-212924000 Enhancers Primary T helper naive cells from peripheral blood blood
50 chr1:212923000-212924000 Enhancers Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015