The 2.0 version of rSNPBase

Variant report

Variant rs11800378
Chromosome Location chr1:94221934-94221935
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94216000-94224800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:94216400-94223800 Weak transcription Fetal Intestine Small intestine
3 chr1:94216800-94223000 Enhancers Osteobl bone
4 chr1:94216800-94224400 Weak transcription Right Atrium heart
5 chr1:94217600-94223200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:94218000-94222400 Weak transcription Fetal Muscle Leg muscle
7 chr1:94218000-94222600 Weak transcription Fetal Muscle Trunk muscle
8 chr1:94218000-94222800 Weak transcription Brain Anterior Caudate brain
9 chr1:94218000-94223200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:94218000-94223800 Weak transcription Thymus Thymus
11 chr1:94218000-94224200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:94218400-94222200 Weak transcription Left Ventricle heart
13 chr1:94218400-94222600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:94218400-94222800 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:94218400-94222800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr1:94218600-94222600 Enhancers NHDF-Ad bronchial
17 chr1:94218800-94222600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:94218800-94223600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:94218800-94225200 Enhancers NHLF lung
20 chr1:94219600-94222600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:94219600-94222600 Weak transcription Lung lung
22 chr1:94219600-94223800 Weak transcription Spleen Spleen
23 chr1:94219600-94224200 Weak transcription Fetal Thymus thymus
24 chr1:94219800-94222400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:94219800-94223800 Enhancers Hela-S3 cervix
26 chr1:94219800-94224800 Weak transcription Brain Hippocampus Middle brain
27 chr1:94219800-94226200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr1:94219800-94231600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:94220000-94222200 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:94220000-94222600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:94220000-94223200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:94220000-94224200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:94220000-94224800 Weak transcription Brain Cingulate Gyrus brain
34 chr1:94220000-94254200 Weak transcription Aorta Aorta
35 chr1:94220200-94222800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:94220200-94224200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:94220400-94222400 Weak transcription Adipose Nuclei Adipose
38 chr1:94220600-94222400 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:94220600-94222400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:94220600-94223800 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr1:94220600-94224200 Weak transcription HSMMtube muscle
42 chr1:94221000-94222000 Enhancers HepG2 liver
43 chr1:94221000-94222200 Weak transcription HSMM muscle
44 chr1:94221200-94222200 Weak transcription Muscle Satellite Cultured Cells --
45 chr1:94221200-94222200 Enhancers A549 lung
46 chr1:94221200-94225600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:94221200-94225600 Enhancers Fetal Lung lung
48 chr1:94221200-94226600 Enhancers Placenta Placenta
49 chr1:94221400-94224200 Weak transcription NH-A brain
50 chr1:94221400-94225600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015