Variant report

Variant	rs60465681
Chromosome Location	chr1:94235167-94235168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94230167..94233599-chr1:94234522..94237747,3	K562	blood:
2	chr1:94230247..94233265-chr1:94234348..94236266,3	K562	blood:
3	chr1:94232434..94235361-chr1:94242307..94244423,2	K562	blood:
4	chr1:94223826..94225778-chr1:94232958..94235783,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11799613	1.00[EUR][1000 genomes]
rs11799798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800378	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11804187	1.00[AMR][1000 genomes]
rs11805483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11806874	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807845	1.00[AMR][1000 genomes]
rs11810655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11811077	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11812065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17878956	1.00[AMR][1000 genomes]
rs17881957	1.00[AMR][1000 genomes]
rs17884925	1.00[AMR][1000 genomes]
rs2143995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34212520	1.00[AMR][1000 genomes]
rs57824006	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59857996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59984689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94223000-94237000	Weak transcription	NHEK	skin
3	chr1:94231600-94236000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:94231600-94236200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:94231600-94236200	Enhancers	Fetal Thymus	thymus
6	chr1:94233400-94235400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:94233400-94235800	Enhancers	Placenta	Placenta
8	chr1:94233400-94236000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:94233400-94236200	Enhancers	Fetal Intestine Large	intestine
10	chr1:94233600-94235200	Enhancers	NHDF-Ad	bronchial
11	chr1:94233600-94235400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:94233600-94235400	Enhancers	Brain Anterior Caudate	brain
13	chr1:94233600-94235400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:94233600-94235400	Enhancers	Hela-S3	cervix
15	chr1:94233600-94235600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:94233600-94235600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr1:94233600-94235600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:94233600-94235800	Enhancers	Right Atrium	heart
19	chr1:94233600-94236000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:94233600-94236000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:94233600-94236000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:94233600-94236000	Enhancers	Adipose Nuclei	Adipose
23	chr1:94233600-94236000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:94233600-94236000	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:94233600-94236000	Enhancers	Fetal Muscle Leg	muscle
26	chr1:94233600-94236000	Enhancers	Ovary	ovary
27	chr1:94233600-94236200	Enhancers	Fetal Intestine Small	intestine
28	chr1:94233600-94238000	Genic enhancers	HMEC	breast
29	chr1:94233600-94239000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:94233800-94235200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:94233800-94235400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:94233800-94235600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr1:94233800-94235600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr1:94233800-94235600	Enhancers	Fetal Lung	lung
35	chr1:94233800-94235600	Enhancers	Right Ventricle	heart
36	chr1:94233800-94235800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr1:94233800-94236000	Enhancers	Fetal Kidney	kidney
38	chr1:94234000-94235200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:94234000-94235600	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:94234000-94235600	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr1:94234000-94235800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:94234200-94235600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr1:94234200-94235800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr1:94234200-94236000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr1:94234400-94235600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:94234400-94235600	Enhancers	Small Intestine	intestine
47	chr1:94234400-94236000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:94234600-94235200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:94234600-94235200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr1:94234600-94235600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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