Variant report

Variant	rs11803135
Chromosome Location	chr1:210059260-210059261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210059116..210059619-chr19:42758225..42758725,2	Hela-S3	cervix:
2	chr1:210057678..210059347-chr1:210545335..210547979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58260740	1.00[EUR][1000 genomes]
rs59958527	1.00[EUR][1000 genomes]
rs60110781	1.00[EUR][1000 genomes]
rs73093837	1.00[EUR][1000 genomes]
rs73093866	1.00[EUR][1000 genomes]
rs73093874	1.00[EUR][1000 genomes]
rs73093876	1.00[EUR][1000 genomes]
rs73095703	1.00[EUR][1000 genomes]
rs7524534	1.00[EUR][1000 genomes]
rs7534109	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210055600-210060400	Enhancers	HSMMtube	muscle
2	chr1:210055800-210060000	Weak transcription	Pancreas	Pancrea
3	chr1:210055800-210060200	Enhancers	HSMM	muscle
4	chr1:210056200-210060400	Enhancers	NHEK	skin
5	chr1:210056400-210059400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:210056400-210059800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:210056400-210060400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:210056400-210060400	Enhancers	HMEC	breast
9	chr1:210056600-210060000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210056600-210060200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:210056800-210059400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:210057200-210059800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:210058000-210059400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:210058000-210059800	Enhancers	NHDF-Ad	bronchial
15	chr1:210058000-210061200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:210058000-210064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:210058200-210059400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:210058200-210059800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:210058200-210060200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:210058200-210060200	Enhancers	NH-A	brain
21	chr1:210058200-210060600	Enhancers	Hela-S3	cervix
22	chr1:210058400-210059600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:210058400-210061600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:210058600-210060400	Enhancers	Osteobl	bone
25	chr1:210058600-210063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:210058800-210064000	Weak transcription	HUVEC	blood vessel
27	chr1:210059000-210060400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr1:210059200-210059800	Enhancers	Brain Hippocampus Middle	brain
29	chr1:210059200-210060000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:210059200-210061000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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