Variant report

Variant	rs73095703
Chromosome Location	chr1:210053026-210053027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210051709..210053987-chr1:210055689..210058098,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11803135	1.00[EUR][1000 genomes]
rs2206043	0.88[AFR][1000 genomes]
rs58260740	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59958527	1.00[EUR][1000 genomes]
rs60110781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093837	1.00[EUR][1000 genomes]
rs73093866	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73093874	1.00[EUR][1000 genomes]
rs73093876	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7524534	1.00[EUR][1000 genomes]
rs7534109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210041000-210055400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:210047400-210053400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:210049400-210056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:210051000-210057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:210051200-210056200	Weak transcription	NHDF-Ad	bronchial
6	chr1:210052000-210055600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:210052200-210053600	Enhancers	NHEK	skin
8	chr1:210052200-210053800	Enhancers	Hela-S3	cervix
9	chr1:210052400-210053200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:210052400-210053400	Active TSS	Brain Anterior Caudate	brain
11	chr1:210052400-210053400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:210052400-210053800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:210052400-210053800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:210052400-210053800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:210052400-210053800	Enhancers	HMEC	breast
16	chr1:210052400-210054000	Enhancers	NH-A	brain
17	chr1:210052600-210053200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:210052600-210053600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr1:210052600-210053800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:210052600-210053800	Enhancers	HSMM	muscle
21	chr1:210052600-210054000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:210052600-210054600	Enhancers	Brain Germinal Matrix	brain
23	chr1:210052800-210053200	Active TSS	Brain Angular Gyrus	brain
24	chr1:210052800-210053200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:210052800-210053200	Enhancers	Fetal Brain Female	brain
26	chr1:210052800-210053200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr1:210052800-210053400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:210052800-210053400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:210052800-210053400	Active TSS	Brain Cingulate Gyrus	brain
30	chr1:210052800-210053400	Active TSS	Brain Hippocampus Middle	brain
31	chr1:210052800-210053800	Enhancers	HSMMtube	muscle
32	chr1:210053000-210053400	Flanking Active TSS	Osteobl	bone
33	chr1:210053000-210056600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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