Variant report

Variant	rs73093876
Chromosome Location	chr1:210026488-210026489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210025942..210027634-chr1:210036998..210039024,2	K562	blood:
2	chr1:210016233..210018147-chr1:210024222..210027045,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11803135	1.00[EUR][1000 genomes]
rs58260740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59958527	1.00[EUR][1000 genomes]
rs60110781	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73093806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093837	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093874	1.00[EUR][1000 genomes]
rs73095703	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7524534	1.00[EUR][1000 genomes]
rs7534109	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210001800-210034000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:210002400-210032000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210003200-210027800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:210003200-210028600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr1:210003200-210029400	Strong transcription	Fetal Muscle Trunk	muscle
6	chr1:210003400-210028000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:210003400-210028400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr1:210003600-210028000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:210003800-210028000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:210003800-210028200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:210003800-210028400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:210004000-210027600	Strong transcription	K562	blood
13	chr1:210004000-210027800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:210004000-210028000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:210004000-210028000	Strong transcription	Fetal Thymus	thymus
16	chr1:210004000-210028200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr1:210004000-210030800	Strong transcription	Primary B cells from cord blood	blood
18	chr1:210004200-210027600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr1:210004200-210027600	Strong transcription	Primary hematopoietic stem cells	blood
20	chr1:210004200-210027600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr1:210004200-210027800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:210004200-210027800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr1:210004200-210028000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:210004200-210028400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:210004200-210028400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:210004200-210028800	Strong transcription	Adipose Nuclei	Adipose
27	chr1:210004200-210029600	Strong transcription	Fetal Muscle Leg	muscle
28	chr1:210004200-210030200	Strong transcription	Primary T cells from cord blood	blood
29	chr1:210004400-210029400	Strong transcription	Dnd41	blood
30	chr1:210004600-210028000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr1:210004600-210028000	Strong transcription	GM12878-XiMat	blood
32	chr1:210013200-210028800	Strong transcription	Fetal Intestine Large	intestine
33	chr1:210013400-210028800	Strong transcription	Liver	Liver
34	chr1:210013800-210028000	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr1:210013800-210029400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:210014400-210028800	Strong transcription	NHEK	skin
37	chr1:210014400-210029400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:210014600-210027600	Strong transcription	HSMM	muscle
39	chr1:210014600-210028200	Strong transcription	Hela-S3	cervix
40	chr1:210017600-210027400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:210017600-210027800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:210017600-210027800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:210017600-210041200	Weak transcription	Fetal Brain Male	brain
44	chr1:210018000-210032800	Weak transcription	Small Intestine	intestine
45	chr1:210018800-210029400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:210019000-210028600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:210019000-210033800	Weak transcription	Fetal Heart	heart
48	chr1:210019800-210027800	Strong transcription	NH-A	brain
49	chr1:210019800-210028800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr1:210019800-210030200	Strong transcription	Rectal Mucosa Donor 29	rectum

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