Variant report

Variant	rs60110781
Chromosome Location	chr1:210034436-210034437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210033587..210036202-chr1:210159897..210162588,2	MCF-7	breast:
2	chr1:210033301..210034521-chr1:210162056..210163321,7	MCF-7	breast:
3	chr1:210032919..210034879-chr1:210043076..210045650,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11803135	1.00[EUR][1000 genomes]
rs58260740	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59958527	1.00[EUR][1000 genomes]
rs73093806	0.89[AFR][1000 genomes]
rs73093807	0.89[AFR][1000 genomes]
rs73093837	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73093866	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73093874	1.00[EUR][1000 genomes]
rs73093876	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73095703	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7524534	1.00[EUR][1000 genomes]
rs7534109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210017600-210041200	Weak transcription	Fetal Brain Male	brain
2	chr1:210025000-210035800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:210026200-210035400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:210026200-210035600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:210027600-210034600	Weak transcription	K562	blood
6	chr1:210027600-210036200	Weak transcription	Fetal Lung	lung
7	chr1:210027600-210036800	Weak transcription	HSMM	muscle
8	chr1:210027800-210034800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:210027800-210035000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:210027800-210035400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:210028000-210036200	Weak transcription	HSMMtube	muscle
12	chr1:210028200-210036400	Weak transcription	Hela-S3	cervix
13	chr1:210028200-210042400	Weak transcription	NHDF-Ad	bronchial
14	chr1:210028400-210034600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:210028400-210036800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:210028400-210037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:210028400-210039600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:210028800-210036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:210029200-210035800	Weak transcription	Brain Anterior Caudate	brain
20	chr1:210029200-210036200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:210029400-210035000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:210029400-210035200	Weak transcription	Fetal Intestine Small	intestine
23	chr1:210029400-210036400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:210029600-210034800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:210029600-210035000	Weak transcription	Brain Germinal Matrix	brain
26	chr1:210029600-210035400	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:210029600-210036200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:210029600-210036400	Weak transcription	Ovary	ovary
29	chr1:210029600-210037400	Weak transcription	Lung	lung
30	chr1:210029800-210035000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr1:210029800-210036200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:210029800-210036400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:210030200-210035000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:210030200-210035000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr1:210031000-210035800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:210032400-210035600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:210034000-210034800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr1:210034000-210035800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:210034000-210036000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr1:210034000-210037600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:210034200-210034800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr1:210034200-210034800	Enhancers	Liver	Liver
43	chr1:210034200-210035200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:210034200-210035600	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr1:210034200-210037400	Enhancers	Brain Hippocampus Middle	brain
46	chr1:210034200-210037600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:210034200-210037600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:210034200-210038600	Enhancers	HMEC	breast
49	chr1:210034400-210035000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:210034400-210035000	Enhancers	NH-A	brain

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