Variant report

Variant	rs11803507
Chromosome Location	chr1:59413234-59413235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10158986	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10159430	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207320	0.82[CHB][hapmap]
rs11207324	0.82[CHB][hapmap]
rs11207340	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207344	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239208	0.82[CHB][hapmap]
rs13375549	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1886742	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41287670	0.81[EUR][1000 genomes]
rs57136299	0.93[EUR][1000 genomes]
rs57438070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58237960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58289858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58865277	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60043252	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61414370	0.93[EUR][1000 genomes]
rs6667591	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6678724	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6693265	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72921508	0.93[EUR][1000 genomes]
rs72921540	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72921542	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72921578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744171	0.82[CHB][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv829959	chr1:59340330-59503085	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv546316	chr1:59368947-59457815	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59409600-59414000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:59410000-59415600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:59410200-59415400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:59410400-59415200	Weak transcription	Pancreas	Pancrea
5	chr1:59410600-59414000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:59410600-59414000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:59410800-59414000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:59410800-59414000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:59410800-59414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:59410800-59414600	Weak transcription	Fetal Thymus	thymus
11	chr1:59411000-59414000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:59411000-59414200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:59411000-59414400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:59411000-59414600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:59412000-59414000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:59412000-59414000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:59412000-59414000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr1:59412000-59414400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr1:59412200-59414000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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