Variant report

Variant	rs61414370
Chromosome Location	chr1:59415477-59415478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10158986	0.93[EUR][1000 genomes]
rs10159430	0.93[EUR][1000 genomes]
rs10889123	0.93[EUR][1000 genomes]
rs11207340	0.93[EUR][1000 genomes]
rs11207344	0.93[EUR][1000 genomes]
rs11802596	0.93[EUR][1000 genomes]
rs11803507	0.93[EUR][1000 genomes]
rs13375549	0.93[EUR][1000 genomes]
rs1886742	0.93[EUR][1000 genomes]
rs57136299	0.86[EUR][1000 genomes]
rs57438070	0.93[EUR][1000 genomes]
rs58237960	0.93[EUR][1000 genomes]
rs58289858	0.93[EUR][1000 genomes]
rs58865277	0.93[EUR][1000 genomes]
rs60043252	0.93[EUR][1000 genomes]
rs6667591	0.93[EUR][1000 genomes]
rs6678724	0.93[EUR][1000 genomes]
rs6693265	0.93[EUR][1000 genomes]
rs72921508	0.86[EUR][1000 genomes]
rs72921540	0.93[EUR][1000 genomes]
rs72921542	0.93[EUR][1000 genomes]
rs72921578	0.93[EUR][1000 genomes]
rs744171	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv829959	chr1:59340330-59503085	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv546316	chr1:59368947-59457815	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59410000-59415600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:59414000-59415600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:59414000-59415600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:59414000-59415600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:59414000-59415800	Enhancers	Primary T cells from cord blood	blood
6	chr1:59414000-59415800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:59414600-59415800	Enhancers	Fetal Thymus	thymus
8	chr1:59414800-59418400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:59415200-59416000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:59415200-59416200	Enhancers	Pancreas	Pancrea
11	chr1:59415200-59416400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:59415400-59415800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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