Variant report

Variant rs58237960
Chromosome Location chr1:59394450-59394451
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59385200-59397800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:59386600-59399800 Enhancers Fetal Intestine Small intestine
3 chr1:59388400-59397800 Weak transcription NHLF lung
4 chr1:59388600-59397800 Weak transcription Lung lung
5 chr1:59388800-59394600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:59388800-59397800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:59388800-59398600 Weak transcription Pancreas Pancrea
8 chr1:59389000-59398800 Weak transcription Right Atrium heart
9 chr1:59389000-59407000 Weak transcription Spleen Spleen
10 chr1:59389200-59394600 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:59389200-59395400 Weak transcription Fetal Thymus thymus
12 chr1:59389200-59398600 Weak transcription Psoas Muscle Psoas
13 chr1:59389200-59401400 Weak transcription Left Ventricle heart
14 chr1:59390200-59399600 Enhancers Placenta Amnion Placenta Amnion
15 chr1:59391200-59399600 Enhancers Fetal Intestine Large intestine
16 chr1:59391600-59396200 Enhancers Duodenum Mucosa Duodenum
17 chr1:59391800-59394800 Enhancers Stomach Mucosa stomach
18 chr1:59391800-59396600 Enhancers Rectal Mucosa Donor 31 rectum
19 chr1:59392000-59397800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr1:59392000-59399600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:59392200-59394800 Enhancers Rectal Mucosa Donor 29 rectum
22 chr1:59392600-59395000 Enhancers NHEK skin
23 chr1:59392600-59395200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:59392600-59396200 Enhancers HMEC breast
25 chr1:59392600-59398600 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:59392600-59399400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:59392800-59395000 Enhancers A549 lung
28 chr1:59393000-59396000 Enhancers K562 blood
29 chr1:59393200-59398400 Weak transcription Adipose Nuclei Adipose
30 chr1:59393400-59395400 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr1:59393400-59397600 Weak transcription Primary monocytes fromperipheralblood blood
32 chr1:59393400-59398800 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr1:59393600-59397600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:59393600-59398600 Weak transcription Fetal Lung lung
35 chr1:59393600-59400800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:59393600-59406800 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:59393800-59394600 Weak transcription Gastric stomach
38 chr1:59393800-59395200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:59393800-59396000 Flanking Active TSS Hela-S3 cervix
40 chr1:59393800-59398600 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr1:59394000-59395200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:59394200-59395600 Enhancers Colonic Mucosa Colon
43 chr1:59394400-59395200 Weak transcription Esophagus oesophagus
44 chr1:59394400-59395800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:59394400-59396200 Bivalent Enhancer HepG2 liver
46 chr1:59394400-59396600 Enhancers Small Intestine intestine

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