Variant report

Variant	rs11805320
Chromosome Location	chr1:224896800-224896801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224896062..224897742-chr1:224902518..224904337,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1036431	0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1039265	0.80[CEU][hapmap];0.93[AMR][1000 genomes]
rs10495227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10915691	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10915693	0.81[CEU][hapmap];0.92[CHB][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10915695	0.81[CEU][hapmap];0.93[CHB][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12058085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12060334	0.81[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12062831	0.94[AMR][1000 genomes]
rs12065840	0.81[CEU][hapmap];0.93[AMR][1000 genomes]
rs12068125	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12072810	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12073052	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12077707	0.81[CEU][hapmap]
rs12088524	0.81[CEU][hapmap];0.92[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12092532	0.93[AMR][1000 genomes]
rs12562581	0.91[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12567125	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1337538	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1465766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1465767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16850786	0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4363402	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61603030	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61827113	0.87[AMR][1000 genomes]
rs61827152	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6426147	0.81[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7541279	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7554310	0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
3	chr1:224894800-224898000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:224895200-224896800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:224895200-224896800	Enhancers	HMEC	breast
6	chr1:224895200-224897000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:224895200-224897200	Enhancers	Spleen	Spleen
8	chr1:224895200-224897400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:224895400-224897000	Enhancers	Ovary	ovary
10	chr1:224895400-224897200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr1:224895400-224897200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:224895600-224897000	Enhancers	Liver	Liver
13	chr1:224896000-224896800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:224896000-224902000	Weak transcription	Dnd41	blood
15	chr1:224896200-224914000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:224896400-224897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:224896400-224897200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:224896400-224910600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:224896400-224913800	Weak transcription	NHLF	lung
20	chr1:224896400-224914000	Weak transcription	NH-A	brain
21	chr1:224896600-224898000	Weak transcription	Osteobl	bone
22	chr1:224896600-224898200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:224896600-224899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:224896600-224902600	Weak transcription	NHDF-Ad	bronchial
25	chr1:224896800-224897400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:224896800-224899400	Weak transcription	HMEC	breast

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