The 2.0 version of rSNPBase

Variant report

Variant rs11809508
Chromosome Location chr1:58993847-58993848
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:58934800-58994000 Weak transcription HSMM muscle
3 chr1:58953600-58999200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:58963800-58999000 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr1:58966600-59010600 Weak transcription Placenta Placenta
6 chr1:58967600-59010600 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr1:58974800-59005000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:58974800-59010800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr1:58974800-59011800 Weak transcription Spleen Spleen
10 chr1:58975000-59010600 Weak transcription Stomach Smooth Muscle stomach
11 chr1:58975000-59010800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:58977200-58994000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:58977200-59005000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:58977200-59010800 Weak transcription Brain Angular Gyrus brain
15 chr1:58977200-59011400 Weak transcription Ovary ovary
16 chr1:58977400-58994200 Weak transcription Fetal Lung lung
17 chr1:58977400-58994200 Weak transcription Fetal Thymus thymus
18 chr1:58977400-58994400 Weak transcription Thymus Thymus
19 chr1:58977400-58996200 Weak transcription Fetal Stomach stomach
20 chr1:58977400-58999000 Weak transcription Fetal Muscle Leg muscle
21 chr1:58977400-59005400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:58977400-59008600 Weak transcription Brain Anterior Caudate brain
23 chr1:58977400-59010400 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr1:58977400-59010600 Weak transcription Aorta Aorta
25 chr1:58977400-59010600 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:58977400-59010600 Weak transcription Psoas Muscle Psoas
27 chr1:58977400-59011400 Weak transcription Left Ventricle heart
28 chr1:58977400-59011400 Weak transcription Lung lung
29 chr1:58977600-59011000 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr1:58978200-59010200 Weak transcription Dnd41 blood
31 chr1:58979000-59005400 Weak transcription Duodenum Mucosa Duodenum
32 chr1:58979000-59011400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr1:58980400-58997600 Weak transcription GM12878-XiMat blood
34 chr1:58980600-58994000 Weak transcription Fetal Intestine Large intestine
35 chr1:58982200-59008200 Weak transcription Brain Substantia Nigra brain
36 chr1:58982800-58998000 Weak transcription HSMMtube muscle
37 chr1:58984400-58996400 Strong transcription Primary B cells from peripheral blood blood
38 chr1:58985200-59010600 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:58985800-59010400 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:58985800-59010600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr1:58989000-58998800 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr1:58989200-59004600 Weak transcription Colon Smooth Muscle Colon
43 chr1:58989200-59010600 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr1:58989400-59010600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:58989800-58997400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:58990200-58994000 Weak transcription NHDF-Ad bronchial
47 chr1:58990400-58995800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:58990800-58994000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:58990800-58995800 Weak transcription Primary T cells from cord blood blood
50 chr1:58990800-59008200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015