The 2.0 version of rSNPBase

Variant report

Variant rs6662905
Chromosome Location chr1:58989335-58989336
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:58934800-58994000 Weak transcription HSMM muscle
3 chr1:58946400-58993800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr1:58953600-58999200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:58963800-58999000 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr1:58966600-59010600 Weak transcription Placenta Placenta
7 chr1:58967600-59010600 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr1:58974800-58991600 Weak transcription Esophagus oesophagus
9 chr1:58974800-59005000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:58974800-59010800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:58974800-59011800 Weak transcription Spleen Spleen
12 chr1:58975000-59010600 Weak transcription Stomach Smooth Muscle stomach
13 chr1:58975000-59010800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:58977000-58993000 Strong transcription Primary T cells fromperipheralblood blood
15 chr1:58977200-58994000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:58977200-59005000 Weak transcription Rectal Smooth Muscle rectum
17 chr1:58977200-59010800 Weak transcription Brain Angular Gyrus brain
18 chr1:58977200-59011400 Weak transcription Ovary ovary
19 chr1:58977400-58989400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:58977400-58990200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr1:58977400-58990200 Weak transcription Fetal Kidney kidney
22 chr1:58977400-58994200 Weak transcription Fetal Lung lung
23 chr1:58977400-58994200 Weak transcription Fetal Thymus thymus
24 chr1:58977400-58994400 Weak transcription Thymus Thymus
25 chr1:58977400-58996200 Weak transcription Fetal Stomach stomach
26 chr1:58977400-58999000 Weak transcription Fetal Muscle Leg muscle
27 chr1:58977400-59005400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:58977400-59008600 Weak transcription Brain Anterior Caudate brain
29 chr1:58977400-59010400 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:58977400-59010600 Weak transcription Aorta Aorta
31 chr1:58977400-59010600 Weak transcription Brain Inferior Temporal Lobe brain
32 chr1:58977400-59010600 Weak transcription Psoas Muscle Psoas
33 chr1:58977400-59011400 Weak transcription Left Ventricle heart
34 chr1:58977400-59011400 Weak transcription Lung lung
35 chr1:58977600-59011000 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:58978200-59010200 Weak transcription Dnd41 blood
37 chr1:58978400-58991800 Weak transcription Fetal Heart heart
38 chr1:58979000-59005400 Weak transcription Duodenum Mucosa Duodenum
39 chr1:58979000-59011400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr1:58979200-58993200 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr1:58980400-58997600 Weak transcription GM12878-XiMat blood
42 chr1:58980600-58994000 Weak transcription Fetal Intestine Large intestine
43 chr1:58982200-58993000 Strong transcription Primary T helper cells fromperipheralblood blood
44 chr1:58982200-59008200 Weak transcription Brain Substantia Nigra brain
45 chr1:58982800-58998000 Weak transcription HSMMtube muscle
46 chr1:58984200-58991800 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:58984400-58996400 Strong transcription Primary B cells from peripheral blood blood
48 chr1:58984600-58991600 Strong transcription Primary B cells from cord blood blood
49 chr1:58984800-58993000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:58985200-58990600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015