The 2.0 version of rSNPBase

Variant report

Variant rs61629658
Chromosome Location chr1:58994112-58994113
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:58953600-58999200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:58963800-58999000 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr1:58966600-59010600 Weak transcription Placenta Placenta
5 chr1:58967600-59010600 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr1:58974800-59005000 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:58974800-59010800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr1:58974800-59011800 Weak transcription Spleen Spleen
9 chr1:58975000-59010600 Weak transcription Stomach Smooth Muscle stomach
10 chr1:58975000-59010800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr1:58977200-59005000 Weak transcription Rectal Smooth Muscle rectum
12 chr1:58977200-59010800 Weak transcription Brain Angular Gyrus brain
13 chr1:58977200-59011400 Weak transcription Ovary ovary
14 chr1:58977400-58994200 Weak transcription Fetal Lung lung
15 chr1:58977400-58994200 Weak transcription Fetal Thymus thymus
16 chr1:58977400-58994400 Weak transcription Thymus Thymus
17 chr1:58977400-58996200 Weak transcription Fetal Stomach stomach
18 chr1:58977400-58999000 Weak transcription Fetal Muscle Leg muscle
19 chr1:58977400-59005400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:58977400-59008600 Weak transcription Brain Anterior Caudate brain
21 chr1:58977400-59010400 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:58977400-59010600 Weak transcription Aorta Aorta
23 chr1:58977400-59010600 Weak transcription Brain Inferior Temporal Lobe brain
24 chr1:58977400-59010600 Weak transcription Psoas Muscle Psoas
25 chr1:58977400-59011400 Weak transcription Left Ventricle heart
26 chr1:58977400-59011400 Weak transcription Lung lung
27 chr1:58977600-59011000 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:58978200-59010200 Weak transcription Dnd41 blood
29 chr1:58979000-59005400 Weak transcription Duodenum Mucosa Duodenum
30 chr1:58979000-59011400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:58980400-58997600 Weak transcription GM12878-XiMat blood
32 chr1:58982200-59008200 Weak transcription Brain Substantia Nigra brain
33 chr1:58982800-58998000 Weak transcription HSMMtube muscle
34 chr1:58984400-58996400 Strong transcription Primary B cells from peripheral blood blood
35 chr1:58985200-59010600 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr1:58985800-59010400 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:58985800-59010600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr1:58989000-58998800 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr1:58989200-59004600 Weak transcription Colon Smooth Muscle Colon
40 chr1:58989200-59010600 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr1:58989400-59010600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:58989800-58997400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr1:58990400-58995800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:58990800-58995800 Weak transcription Primary T cells from cord blood blood
45 chr1:58990800-59008200 Weak transcription Brain Hippocampus Middle brain
46 chr1:58990800-59011000 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr1:58991400-59003800 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:58991600-58999600 Weak transcription Primary B cells from cord blood blood
49 chr1:58991800-58995200 Enhancers Pancreatic Islets Pancreatic Islet
50 chr1:58992400-59003400 Weak transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015