Variant report

Variant	rs7536984
Chromosome Location	chr1:58988101-58988102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10218842	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489816	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11207256	0.94[EUR][1000 genomes]
rs11207257	0.94[EUR][1000 genomes]
rs11799408	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11799415	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11799786	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800241	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11801938	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11802520	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11803703	0.92[EUR][1000 genomes]
rs11805031	0.92[EUR][1000 genomes]
rs11805701	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11805835	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11807046	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11807197	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11808437	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11808438	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11808738	0.92[EUR][1000 genomes]
rs11809508	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12024500	0.94[EUR][1000 genomes]
rs1503646	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1503647	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1503648	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1627332	0.86[EUR][1000 genomes]
rs17117574	0.92[EUR][1000 genomes]
rs17117627	0.92[EUR][1000 genomes]
rs17117643	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17117647	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17117678	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17447078	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17498811	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17506467	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1775001	0.86[EUR][1000 genomes]
rs1847350	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1847351	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891435	0.92[EUR][1000 genomes]
rs2271005	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs232843	0.86[EUR][1000 genomes]
rs232845	0.86[EUR][1000 genomes]
rs232846	0.86[EUR][1000 genomes]
rs2406783	0.94[EUR][1000 genomes]
rs338234	0.90[EUR][1000 genomes]
rs35075952	0.86[EUR][1000 genomes]
rs41296155	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41311174	0.86[EUR][1000 genomes]
rs488606	0.94[EUR][1000 genomes]
rs4912196	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4912340	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4912341	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4912342	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4912343	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4912345	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4912346	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4912347	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs492988	0.86[EUR][1000 genomes]
rs511687	0.86[EUR][1000 genomes]
rs512462	0.86[EUR][1000 genomes]
rs518070	0.85[EUR][1000 genomes]
rs530095	0.94[EUR][1000 genomes]
rs532134	0.94[EUR][1000 genomes]
rs542727	0.86[EUR][1000 genomes]
rs544596	0.86[EUR][1000 genomes]
rs546271	0.85[EUR][1000 genomes]
rs546358	0.86[EUR][1000 genomes]
rs548275	0.86[EUR][1000 genomes]
rs55712302	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55721304	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56054934	0.90[EUR][1000 genomes]
rs56109164	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs564252	0.88[EUR][1000 genomes]
rs565008	0.88[EUR][1000 genomes]
rs565617	0.86[EUR][1000 genomes]
rs565954	0.88[EUR][1000 genomes]
rs567787	0.85[EUR][1000 genomes]
rs573135	0.86[EUR][1000 genomes]
rs586847	0.86[EUR][1000 genomes]
rs593279	0.94[EUR][1000 genomes]
rs594973	0.86[EUR][1000 genomes]
rs595909	0.86[EUR][1000 genomes]
rs61629658	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61779267	0.86[EUR][1000 genomes]
rs61779289	0.86[EUR][1000 genomes]
rs61779290	0.86[EUR][1000 genomes]
rs61779294	0.81[EUR][1000 genomes]
rs61781782	0.92[EUR][1000 genomes]
rs61781784	0.92[EUR][1000 genomes]
rs61781785	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61781787	0.92[EUR][1000 genomes]
rs61781789	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61781790	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61781792	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61781813	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61781815	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61781816	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61781818	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61781819	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61781821	0.88[EUR][1000 genomes]
rs61781822	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61781823	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61781824	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs621754	0.86[EUR][1000 genomes]
rs627633	0.86[EUR][1000 genomes]
rs628623	0.86[EUR][1000 genomes]
rs635775	0.86[EUR][1000 genomes]
rs641929	0.86[EUR][1000 genomes]
rs644928	0.94[EUR][1000 genomes]
rs654299	0.86[EUR][1000 genomes]
rs657202	0.84[EUR][1000 genomes]
rs657711	0.86[EUR][1000 genomes]
rs6587817	0.90[EUR][1000 genomes]
rs6587829	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs664570	0.86[EUR][1000 genomes]
rs6658743	0.90[EUR][1000 genomes]
rs6662028	0.92[EUR][1000 genomes]
rs6662905	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6663128	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6665320	0.94[EUR][1000 genomes]
rs6682499	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6682661	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6682720	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6684437	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6684553	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6686976	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6694699	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6698355	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs671830	0.88[EUR][1000 genomes]
rs672859	0.88[EUR][1000 genomes]
rs673276	0.88[EUR][1000 genomes]
rs725907	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7354819	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355030	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7511732	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7513876	0.94[EUR][1000 genomes]
rs7514159	0.94[EUR][1000 genomes]
rs7519465	0.86[EUR][1000 genomes]
rs7535313	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7537470	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7547348	0.94[EUR][1000 genomes]
rs7548097	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9583	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv998092	chr1:58978327-59002319	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7536984	DAB1///OMA1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58931200-59010800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:58934800-58994000	Weak transcription	HSMM	muscle
3	chr1:58946400-58993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:58953600-58999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:58955000-58988200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:58963800-58999000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:58966600-59010600	Weak transcription	Placenta	Placenta
8	chr1:58967600-59010600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:58974800-58991600	Weak transcription	Esophagus	oesophagus
10	chr1:58974800-59005000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:58974800-59010800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:58974800-59011800	Weak transcription	Spleen	Spleen
13	chr1:58975000-59010600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:58975000-59010800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:58977000-58993000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr1:58977200-58994000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:58977200-59005000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:58977200-59010800	Weak transcription	Brain Angular Gyrus	brain
19	chr1:58977200-59011400	Weak transcription	Ovary	ovary
20	chr1:58977400-58988600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:58977400-58989400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:58977400-58990200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:58977400-58990200	Weak transcription	Fetal Kidney	kidney
24	chr1:58977400-58994200	Weak transcription	Fetal Lung	lung
25	chr1:58977400-58994200	Weak transcription	Fetal Thymus	thymus
26	chr1:58977400-58994400	Weak transcription	Thymus	Thymus
27	chr1:58977400-58996200	Weak transcription	Fetal Stomach	stomach
28	chr1:58977400-58999000	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:58977400-59005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:58977400-59008600	Weak transcription	Brain Anterior Caudate	brain
31	chr1:58977400-59010400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:58977400-59010600	Weak transcription	Aorta	Aorta
33	chr1:58977400-59010600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:58977400-59010600	Weak transcription	Psoas Muscle	Psoas
35	chr1:58977400-59011400	Weak transcription	Left Ventricle	heart
36	chr1:58977400-59011400	Weak transcription	Lung	lung
37	chr1:58977600-58988600	Weak transcription	Colon Smooth Muscle	Colon
38	chr1:58977600-58988600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:58977600-59011000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:58978200-59010200	Weak transcription	Dnd41	blood
41	chr1:58978400-58991800	Weak transcription	Fetal Heart	heart
42	chr1:58979000-59005400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:58979000-59011400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:58979200-58993200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:58980200-58988200	Weak transcription	Liver	Liver
46	chr1:58980400-58997600	Weak transcription	GM12878-XiMat	blood
47	chr1:58980600-58994000	Weak transcription	Fetal Intestine Large	intestine
48	chr1:58982200-58988200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:58982200-58993000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr1:58982200-59008200	Weak transcription	Brain Substantia Nigra	brain

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