Variant report

Variant	rs11813862
Chromosome Location	chr10:18905068-18905069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18883515..18884111-chr10:18904979..18905887,2	MCF-7	breast:
2	chr10:18904719..18906384-chr10:18907466..18910292,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11813408	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11815170	0.85[AFR][1000 genomes]
rs11815892	0.85[AFR][1000 genomes]
rs11816097	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11818242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28633741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34426898	0.86[AFR][1000 genomes]
rs34813638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35168277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7081090	1.00[AMR][1000 genomes]
rs7082812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
7	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
16	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
17	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
18	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
19	chr10:18877600-18916400	Weak transcription	Gastric	stomach
20	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
22	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
24	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:18884800-18909400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:18885400-18916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:18885400-18916400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:18891600-18916400	Weak transcription	Lung	lung
29	chr10:18895400-18908000	Weak transcription	Fetal Brain Male	brain
30	chr10:18895600-18916400	Weak transcription	Left Ventricle	heart
31	chr10:18896400-18907200	Strong transcription	Primary T cells from cord blood	blood
32	chr10:18896600-18916400	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:18896600-18916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:18896800-18916000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:18897200-18906600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:18897200-18916400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:18898400-18916400	Weak transcription	Fetal Kidney	kidney
38	chr10:18898400-18916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:18900000-18906600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:18900000-18910000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:18900000-18912600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:18900000-18915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:18900000-18915800	Weak transcription	NHEK	skin
44	chr10:18900000-18916200	Weak transcription	NHLF	lung
45	chr10:18900000-18916600	Weak transcription	Stomach Mucosa	stomach
46	chr10:18900200-18906400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:18900200-18907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:18900200-18907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:18900200-18915800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:18900200-18916000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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